| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3276 |
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| Symbol | |
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| ID | 5371216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 3905568 |
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| End bp | 3907622 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640831526 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001367466 |
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| Protein GI | 153001785 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0261711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGGCC GTTTTAAGTC ACTGACGTGG AAACAAACTA ACCTAGTCGT ATTTACTGCC
CTATTTTTTG CCATTGCCAT TTTTATTGTT GAAATCGCTT TAGTCGTTGT ATCAACCAAA
CAACAACTCA CGACTACACA GCAAGAACTC CTTGATTCAG TTGAACAACC TGCAGCAAAT
GCCGTCTGGG CATTAGATGA TAATTTAGCC CGTCAAACCT TAGAAGGTGC CATTAAGGTT
GAGCATGTCG GCTCAGCAGT GATCGAGCTG GACGATGGTT CCATGTTTGT ATCAGTCAGC
AATAATAAAA AGAATAACTC GCAGACTTTT ATCAGCTTAA GTAACAAATT ATTTGATGAT
CTCAAGGAAA TATCTCGCCC ACTCTATCGG CCTTTTTATT TCGAAGGCAC TCAACAACAG
CAACTCATTG GCACATTAAC AGTTTTCTAC GACACCCAAG AGCTGACAAA CACCCTTTTC
TCGCAGTTAA GATTTAGTTT TTTCGCCACG CTTGCCCGCG CACTCTTACT CACCTTAGTG
CTTTCAGTGG TTTTCCATCG TTTCTTGACT CAACCTATCG CGCGTATCAG TGAGGCCATA
GATAAGATTG AACCCGACTC ACCGGACGAA AATCTCTTAC CTATGTCCAA TGCGCATAAG
GATGATGAAC TCGGCCTAGT GACCTCGAAA TTCAACCAAA TTCTTATCCA ATTTAGCCAA
ACCCAATCCA AACTGCGCAA AATGGCGACC CGAGATCCGC TAACGGGCTT ACCGAACCGC
ACACTATTGC TCGAAACCAT CGCAGTCACT ATCCAACGTT CGCGCGTACA CAAACGCAGC
TTTGCCTTGA TGTTTATCGA CTTAGATAGA TTTAAGAATA TTAACGATTC CCTTGGCCAC
GCATTGGGCG ATCAATTCCT CGCCCGTATC GCCCGTATTC TCGAACGCTT CGTTGGCGAT
AAAGGCACAG TGTCTCGCTT AGGTGGCGAT GAGTTTGTAA TTTTAGCCGA CACAGTACAC
ACCCCTGACC AAGCCGCTGA TTTTGTTGAT AAGCTACTGA TCCAGCTTAA TGTCCCTATC
CAATTAAATG AACATGCGAT TCATCCTGCG GCCTCAATTG GGATATCCAT TTATCCCGAA
GACGGTAACA GCGCAGAAGA TTTGATACGT CATGCCGATA TTGCAATGTA CAGCGCCAAA
GCTGCAGGTT CGAATCAATG GGCCTTCTTT AAACAACAGA TGACAGAACG CGCCGCTGTG
CGTTTACGCA CCGAAGCATC CTTGCATGAT GCGTTAAAAA ACAACGAATT TTTGCTGTAT
TTCCAACCTA AACTCGATCT GCAAACGGGC AAAGTGATTG CCTGTGAAGC CTTGATCCGC
TGGCAAAAAG ATGGGCGACT CATCAGTCCG GTTTCTTTTA TTCCCGTAGC CGAAGAAACG
GGGATCATCA TTCCGATTGG ACGCTGGGTA ATAGAACAAA GCTGCAAGGT CTTGAGGGAG
TGGCAGAAAA AATATAACTA TGCCATCCCA ATTGCGATTA ATGTTGCCTC ACAACAATTT
GCGGATGCTA GTTTAGTTCC CGATATCAAG CAGATGGCAT TACGCTATCA AATCCAACCC
GAGTTGTTGG AAATTGAAAT CACTGAAACC TCGTTGATGA ACGACATTGA ACTGGCTATC
GCTAAGCTTG AACAACTTAA ATCAGCAGGG TTTGGTATTG CCGTCGATGA CTTCGGCACC
GGATATTCAT CACTTTCTTA CCTACGCCAT TTGCCCATCA CCACCATGAA AATCGACCGC
TGTTTCGTGT CCGATTTACC AGGGGATAGC GCAATCGCAT CGACCATTCT GATGTTAGGT
AAGCAGCTTA ATTTGACCAT TGTGGCCGAA GGGATTGAAA ACGAGCAGCA ATTGGATTGG
TTGAAGGAAA ATCAGTGCCA AGTCGGCCAA GGTTTTTATT TTAGCCAACC CCTGCCCCAA
GCGGAATTTG AAGCCCTGTA TATAGCAACA CAGACAGCAA CGATAAGTAG TCTTGATGGC
TTACGTGGGG CTTAG
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| Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVVSTK QQLTTTQQEL LDSVEQPAAN
AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD
LKEISRPLYR PFYFEGTQQQ QLIGTLTVFY DTQELTNTLF SQLRFSFFAT LARALLLTLV
LSVVFHRFLT QPIARISEAI DKIEPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH
ALGDQFLARI ARILERFVGD KGTVSRLGGD EFVILADTVH TPDQAADFVD KLLIQLNVPI
QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVIACEALIR WQKDGRLISP VSFIPVAEET
GIIIPIGRWV IEQSCKVLRE WQKKYNYAIP IAINVASQQF ADASLVPDIK QMALRYQIQP
ELLEIEITET SLMNDIELAI AKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKENQCQVGQ GFYFSQPLPQ
AEFEALYIAT QTATISSLDG LRGA
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