Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3227 |
Symbol | deoD |
ID | 5370067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 3850668 |
End bp | 3851378 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640831477 |
Product | purine nucleoside phosphorylase |
Protein accession | YP_001367417 |
Protein GI | 153001736 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0813] Purine-nucleoside phosphorylase |
TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAACAC CACACATTAA TGCTGTAGAG GGCGCATTCG CTGAGACAAT GCTGTTTCCA GGCGATCCAT TACGTGCAAA ATATATTGCT GAAACATTCT TAGAAAATGT TGAGCAAGTG ACTGATGTTC GAAACATGCT AGGTTTTACT GGTACTTACA AAGGTAAGCG TATTTCAGTT ATGGGTTCAG GCATGGGTAT TCCTTCATGC TCTATCTATG CAACTGAATT AATTCGTGAT TACGGCGTTA AAAACCTGAT CCGTGTGGGT ACTTGTGGTG CGATCAGCAC TGACGTTAAA GTACGTGACG TGATCATTGG TATGGGTGCA TGTACTGACT CAGCGGTTAA CCGTTTACGT TTCAAAGGCC AAGATTTTGC TGCTATCGCT AACTATGAGC TGATGAATGC GGTTATCGAG TCTGCGAAAG TTCGTGGTAC TAAAGTTCGC GTAGGTAATA TTTTCTCTGC GGACCTGTTC TACACTCCTG ATCCACAAAT GTTTGACGTG ATGGAGAAGA TGGGTGTATT AGGCGTAGAA ATGGAAGCGG CTGGTTTGTA CGGCGTTGCC CATGAGTTTG GTGCGCGTGC CCTGTGCGTT GTGACTGTAT CTGATCATAT CCGCACCGGT GAAAAGACGT CTGCAGAAGA ACGTCAAACC ACATTCAATG ACATGATCAT CATGACATTA GAAGCGGCGA TTACACTGTA A
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Protein sequence | MATPHINAVE GAFAETMLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV MGSGMGIPSC SIYATELIRD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSAVNRLR FKGQDFAAIA NYELMNAVIE SAKVRGTKVR VGNIFSADLF YTPDPQMFDV MEKMGVLGVE MEAAGLYGVA HEFGARALCV VTVSDHIRTG EKTSAEERQT TFNDMIIMTL EAAITL
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