| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3161 |
|---|
| Symbol | glyA |
|---|
| ID | 5373022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 3769326 |
|---|
| End bp | 3770579 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640831414 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_001367354 |
|---|
| Protein GI | 153001673 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.261571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAA AAGATATGAA TATCGCAGAT TATGATCCGG AACTGTTTAA GGCAATTCAG
AATGAAACTC TGCGTCAAGA AGAGCATATT GAGCTGATTG CTTCTGAAAA CTACACCAGT
CCACGCGTGA TGGAAGCGCA AGGTTCACAG TTAACCAATA AGTATGCTGA AGGCTATCCA
GGCAAGCGTT ACTACGGTGG TTGTGAGTAT GTGGACGTAG TTGAAACCTT AGCGATTGAA
CGTGCGAAAG AACTGTTTAG CGCAACTTAC GCTAACGTAC AACCTCATTC AGGTTCACAG
GCAAACAGCG CTGTTTACAT GGCATTGTTA AAACCTGGCG ATACCGTACT GGGCATGAAC
TTAGCCCACG GTGGTCACTT AACCCACGGT TCACCCGTTA ACTTCTCTGG CAAACTGTAC
AACATCATTC CTTACGGTAT CGACGAGTCA GGTAAAATTG ACTACGACGA AATGGAACGT
CTGGCCGTAG AACATAAGCC TAAGATGATG ATCGGCGGTT TCTCTGCCTA TTCAGGTATC
GTTGACTGGG CAAAAATGCG TGAAATTGCT GACAAAATAG GTGCTTACCT ATTTGTCGAC
ATGGCGCACG TTGCCGGTCT TATTGCTGCT GGCGTTTATC CAAACCCAGT TCCACACGCA
CACGTTGTGA CGTCAACGAC CCACAAAACT TTAGCCGGTC CTCGTGGTGG CGTGATCCTG
TCTGCTGCTG ACGATGAAGA CTTGTACAAG AAGTTGAATT CAGCGGTATT TCCAGGCGGT
CAAGGCGGCC CATTAATGCA CGTTATCGCA GGTAAAGCGG TTGCGTTCAA AGAAGCCCTA
GAGCCAGAAT TTAAAGTGTA CCAACAGCAA GTGGTTAACA ACGCTAAAGC TATGGTTGAA
GTGTTCCTTG AGCGCGGTTA CAAAATCGTC TCTGGCGGAA CCAGCAATCA CTTGATGCTA
GTTGATCTGA TTGGTCGTGA CTTAACGGGT AAAGAAGCCG ATGCCGCCTT AGGTAGCGCT
AACATTACCG TGAACAAAAA CTCAGTGCCA AACGACCCAC GTTCACCCTT TGTGACCTCA
GGTGTGCGTA TCGGTACGCC AGCCATTACG CGCCGCGGCT TTAAAGAAGC GGAATCGAAA
GAGCTGACTG GCTGGATTTG TGACATCCTT GATGATGCTA ACAATCCTGC AGTGATTGAG
CGTGTTAAAG GCCAAGTATT GGCACTGTGC GCACGTTTCC CTGTTTACGG TTAA
|
|---|
| Protein sequence | MLKKDMNIAD YDPELFKAIQ NETLRQEEHI ELIASENYTS PRVMEAQGSQ LTNKYAEGYP
GKRYYGGCEY VDVVETLAIE RAKELFSATY ANVQPHSGSQ ANSAVYMALL KPGDTVLGMN
LAHGGHLTHG SPVNFSGKLY NIIPYGIDES GKIDYDEMER LAVEHKPKMM IGGFSAYSGI
VDWAKMREIA DKIGAYLFVD MAHVAGLIAA GVYPNPVPHA HVVTSTTHKT LAGPRGGVIL
SAADDEDLYK KLNSAVFPGG QGGPLMHVIA GKAVAFKEAL EPEFKVYQQQ VVNNAKAMVE
VFLERGYKIV SGGTSNHLML VDLIGRDLTG KEADAALGSA NITVNKNSVP NDPRSPFVTS
GVRIGTPAIT RRGFKEAESK ELTGWICDIL DDANNPAVIE RVKGQVLALC ARFPVYG
|
|---|
| |