| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3159 |
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| Symbol | |
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| ID | 5371235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 3767375 |
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| End bp | 3768529 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640831412 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001367352 |
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| Protein GI | 153001671 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.021729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTGA ACATAAGTTG GTCCGTACTC GATACCCAAA TGATGAGCCG CGCGATTCAA
TTGGCGCGCA AAGGTTTTTA TACCACGAGA CCCAATCCCA GTGTGGGCTG CGTTATCGTT
AAAGATAATC AGATTGTCGG CGAAGGTTAT CATCAAAAAG CGGGTGAGCC CCACGCCGAA
GTGCATGCCT TACGCATGGC TGGTGAACAC GCCCGTGGCG CAACGGCCTA TGTCACCTTA
GAGCCTTGCA GCCATTATGG CCGCACGCCG CCCTGCGCCT TTGCACTGAT CAATATTGGC
GTTAAGCGTG TGGTGGTGGC GGTAGAAGAT CCAAATCCGC AAGTGGCTGG TCGCGGTATT
CAAATGCTGC GCGACGCTGG CATTGAAGTG GATGTGGGAT TACACCGCGA TGAAGCTTAT
GCCTTGAATT TAGGTTTTAT GAAGCGCATG GAATCGGGTT TACCCAGAGT TACAGTCAAA
TTGGCTGCAA GTCTTGATGG TAAAACCGCG CTGTCTAACG GTGTGTCTAA ATGGATTACC
GGGCCTGAAT CTCGCCGTGA CGTTCAGCGC TTACGCTTAC GTTCCTGCGC GTTGGTGACT
GGGATTGAAA CCATACTGGC TGACGATCCC TCACTCAATG TGCGATATCA AGAACTTGGC
GGCATAAAAG ACTGCGTAAC CGAGGCGCAA TTACTGCAGC CATTAAGAGT CATACTCGAC
AGTCGCGCCC GTTTGCCGTT ATCGGCAGCC TGTTTGGCTG TCGTATCGCC GATACTCTTG
GTCTCGACCG TGGCTTATCC CGCAAAGTTT CAAGCACAAT TGCCCTCCCA TGTGAGTTGC
CTCGTGTTAC CTGCGATTGC AGGTCGCGTA TCCTTACCTG AACTATTAAG CTATTTAGGC
CAAAGCTGTA ATCACGTGCT GGTGGAAGCG GGGGCAACCT TAGCGGGCGC TTTTTTAGCA
GAGGGGCTGG CCGATGAATT AGTGCTGTAC CAAGCGATGA AAATCCTCGG TGGGCAAGGG
CGTAATCTAT TGCAGCTACC CGATTATCAA ACCATGGCGC AAATTCCTGC ATTAATGTTG
GTCGATGAGC GCAAATTAGG GCCAGATACC CGTTTAATCT TGAGCGTTAT GCTTGATACT
TCTTTAATTA ATTAA
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| Protein sequence | MSLNISWSVL DTQMMSRAIQ LARKGFYTTR PNPSVGCVIV KDNQIVGEGY HQKAGEPHAE
VHALRMAGEH ARGATAYVTL EPCSHYGRTP PCAFALINIG VKRVVVAVED PNPQVAGRGI
QMLRDAGIEV DVGLHRDEAY ALNLGFMKRM ESGLPRVTVK LAASLDGKTA LSNGVSKWIT
GPESRRDVQR LRLRSCALVT GIETILADDP SLNVRYQELG GIKDCVTEAQ LLQPLRVILD
SRARLPLSAA CLAVVSPILL VSTVAYPAKF QAQLPSHVSC LVLPAIAGRV SLPELLSYLG
QSCNHVLVEA GATLAGAFLA EGLADELVLY QAMKILGGQG RNLLQLPDYQ TMAQIPALML
VDERKLGPDT RLILSVMLDT SLIN
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