| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3145 |
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| Symbol | rumA |
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| ID | 5372121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 3753278 |
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| End bp | 3754630 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640831399 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001367339 |
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| Protein GI | 153001658 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000412374 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAAT TTTTTAAAGC AAAACCAAAT AGTTCCAAAC AGTTGTCGGC TAAGTTATCG
CTGAGTGTCA ATCAGCTCGA TCACTTAGGG GCAGGTATAG CACAACATCA AGGTAAAGTC
GTGTTTATCC CAGGCGCTTT GCCCGATGAA ACCGTGACGG TACAGCTCAC CGAGCAAAAG
AAAAATTATG CCCGCGCCAA GTTAATTAAA GTCGATACAC CTAGCTCTGA GCGCGTCGAG
CCTGAGTGTC CACACTATCA CACCTGCGGC GGCTGCGACT TACAGCATAT GTCATTATCG
GGCCAGCGTG AGCATAAAGA AGCGGCGCTG CTGGATATTA TGGCTAAGTT TGCCGGCGCC
GAAGGCGGCA CGTTATCACC CGCATTAACG GGTGAAGGTT GGCATTATCG TCGCCGTGCC
CGTCTTGCAA CTTTATTTGA TAAAAATACT AAACACTTAA GCTTAGGTTT TCGTGCTGCT
AGTAGCAGCA ACGTGGTGCC TATCAGTCAG TGTCAGGTGT TAGCTAAGCC GTTATCGGAC
TTGATCGTCC CCTTTGCTAA GTTGCTGAAT CAATTGTCGG CTAAAGCCAG CTTAGGCCAC
CTTGAGTTGA TTGCCGCCGA TAATGGTCAC TTCGCCGTGC TGCGTATCAC TAAGGCGCTA
AACGATAAAG ATCTCGCTAA GTTGTCAGCC TTTGCTGAGC AGCATCTGAT CCACATTTGT
CTGCAGGACA ATGAAGGCCA ATTCCAAGGC GTTGGCGCTG AGTTAGTATT ACCGGTTTAT
CAGCTGTTAG GTGACAAAGC TGAGTCGGAT GCGGTGAGTT TAAGCTTTAC CCCAGGTAAC
TTTGTGCAAG TGAATGGACA GATTAACAAG GCCATGGTCG CTCAAGCGCT GGATTGGTTA
GCGCCAGCGC CAGATGAACG CATTTTGGAT TTGTTCTGCG GCATGGGGAA TTTTAGTTTG
CCCTTAGCGA AAATGGGCGC GGATGTGATT GGCGTCGAAG GGGTTGCCGA GATGGTAACT
CAGGCACGGG TGAACGCTAA AGCTAACAAT TTGGATAAAC TGACCTTTTA TCACGGCGAC
TTGAGTGCGG ATTTATCCCT TGAGCCTTGG ATGGGCAAAA TTGATAAATT ACTGCTCGAT
CCTGCCCGCG CGGGGGCGTT TGAAAGCTTG CAATGGCTGA AGAAAATGAA GCCGCGCAAA
GTCGTGTATG TTTCGTGTAA TCCTGCGAGC TTGGCTCGCG ATAGCGCAGT GCTGTTAGAG
CGCGGTTACC GATTACAGCA ATTGGGACTT ATCGACATGT TCCCACAAAC ACACCATATC
GAAGCCATGG CACTGTTTGA ATTAACCAAG TAA
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| Protein sequence | MAQFFKAKPN SSKQLSAKLS LSVNQLDHLG AGIAQHQGKV VFIPGALPDE TVTVQLTEQK
KNYARAKLIK VDTPSSERVE PECPHYHTCG GCDLQHMSLS GQREHKEAAL LDIMAKFAGA
EGGTLSPALT GEGWHYRRRA RLATLFDKNT KHLSLGFRAA SSSNVVPISQ CQVLAKPLSD
LIVPFAKLLN QLSAKASLGH LELIAADNGH FAVLRITKAL NDKDLAKLSA FAEQHLIHIC
LQDNEGQFQG VGAELVLPVY QLLGDKAESD AVSLSFTPGN FVQVNGQINK AMVAQALDWL
APAPDERILD LFCGMGNFSL PLAKMGADVI GVEGVAEMVT QARVNAKANN LDKLTFYHGD
LSADLSLEPW MGKIDKLLLD PARAGAFESL QWLKKMKPRK VVYVSCNPAS LARDSAVLLE
RGYRLQQLGL IDMFPQTHHI EAMALFELTK
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