Gene Shew185_3133 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3133 
SymbolispF 
ID5373765 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp3736646 
End bp3737131 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content50% 
IMG OID640831387 
Product2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
Protein accessionYP_001367327 
Protein GI153001646 
COG category[I] Lipid transport and metabolism 
COG ID[COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
TIGRFAM ID[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.212885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCC GTATCGGCCA TGGTTTCGAT GTGCATAAAT TTGGTGCTGC ACGGCCCCTC 
ATTCTTTGCG GCGTCGAAGT GCCCTATGAA ACTGGCCTAA TCGCACATTC AGATGGTGAT
GTGGTGCTGC ATGCGATTTC CGATGCGATT CTCGGCGCAC TGGCGCTGGG TGACATAGGT
AAACATTTCC CCGACACAGA TACCGCCTAT AAAGGTGCTG ATAGCCGCGT ATTGCTGCGT
CATTGCTATG CTTTAGCGAG GGCGAAAGGC TTTGTGCTGG GTAATCTTGA CGTCACTATC
ATAGCGCAAG CCCCTAAAAT GGCGCCGCAC ATTGAGGCAA TGCGCCAAAT ATTGGCCGCA
GATTTAACCT CGGAACTTGA CGACATTAAC GTCAAAGCGA CCACGACTGA ACAGCTAGGA
TTTACCGGGC GTAAAGAAGG TATTGCGGTA GAAGCCGTGG TATTGATGAC CCGTAAACAC
GATTAA
 
Protein sequence
MKIRIGHGFD VHKFGAARPL ILCGVEVPYE TGLIAHSDGD VVLHAISDAI LGALALGDIG 
KHFPDTDTAY KGADSRVLLR HCYALARAKG FVLGNLDVTI IAQAPKMAPH IEAMRQILAA
DLTSELDDIN VKATTTEQLG FTGRKEGIAV EAVVLMTRKH D