Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3133 |
Symbol | ispF |
ID | 5373765 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 3736646 |
End bp | 3737131 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640831387 |
Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
Protein accession | YP_001367327 |
Protein GI | 153001646 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.212885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATCC GTATCGGCCA TGGTTTCGAT GTGCATAAAT TTGGTGCTGC ACGGCCCCTC ATTCTTTGCG GCGTCGAAGT GCCCTATGAA ACTGGCCTAA TCGCACATTC AGATGGTGAT GTGGTGCTGC ATGCGATTTC CGATGCGATT CTCGGCGCAC TGGCGCTGGG TGACATAGGT AAACATTTCC CCGACACAGA TACCGCCTAT AAAGGTGCTG ATAGCCGCGT ATTGCTGCGT CATTGCTATG CTTTAGCGAG GGCGAAAGGC TTTGTGCTGG GTAATCTTGA CGTCACTATC ATAGCGCAAG CCCCTAAAAT GGCGCCGCAC ATTGAGGCAA TGCGCCAAAT ATTGGCCGCA GATTTAACCT CGGAACTTGA CGACATTAAC GTCAAAGCGA CCACGACTGA ACAGCTAGGA TTTACCGGGC GTAAAGAAGG TATTGCGGTA GAAGCCGTGG TATTGATGAC CCGTAAACAC GATTAA
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Protein sequence | MKIRIGHGFD VHKFGAARPL ILCGVEVPYE TGLIAHSDGD VVLHAISDAI LGALALGDIG KHFPDTDTAY KGADSRVLLR HCYALARAKG FVLGNLDVTI IAQAPKMAPH IEAMRQILAA DLTSELDDIN VKATTTEQLG FTGRKEGIAV EAVVLMTRKH D
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