| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3132 |
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| Symbol | |
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| ID | 5373764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 3735492 |
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| End bp | 3736625 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640831386 |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_001367326 |
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| Protein GI | 153001645 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAT TACATTATCT GTATGGCAAG CCTTTAGGTA CAGCAGATCT AAGAACCCAA
AATAGCGATT TTATCGTGAA AGAGATTTTG CCTTTTAGCC CAACGGGTGA AGGTGAACAT
CACATGCTGC ATGTACGCAA AGAAGGGCTA AATACAGTAC AAGTCGCTGA AATGATAGCT
AAGTTCGCTA AGGTGCATCC AAAGGAAGTG ACCTACGCTG GGCAAAAAGA TAAAAATGCC
ATCACAGAAC AATGGTTCGG TGTGCGTATT CCGGGTAAAG AGACACCGCT TTGGAAGGAG
CTCAATAGCG AACGTTTGAC CATATTGTCG AGCAGCCGCC ACAGCAAAAA ACTGCGAATT
GGCGCCTTAG TCGGTAACCG TTTTATTCTT ACCCTGAGAA ATGTCACCCA AGTCGAAGAC
ATTATCAGCC GTATCGAAAA GGTCGCTCAA GTGGGCGTGC CCAATTACTT TGGTGAGCAA
CGCTTTGGTC ACGATGGTAA AAACTTAGTT TTTGGTCGCC AAATGATGGC GGGTAAAAAA
GTCAAAGATA GAAATAAGCG CAGCATGTAT TTGTCTGCGG TGCGCTCAAA TCTGTTTAAC
ACTGTAGTGT CGTATCGTTT AGCCAACCAT GGCACTAAGC CTCTTGCGGG TGATTGTGTG
ATGTTGGCGG GCAGCAAAAG CTTCTTCGTT ACGCCTGAAT GGGATCTCAT CGTATTGAAA
CGTCTGATTG AAAAAGACAT TCAACTATCA GCACCATTAT GGGGCCGCGG CATGATGCTG
CCTCAAGGTG AAGCTGCTGC GGTGGAAACC TTGGCCATGA GTGAGTTGGC TGATGATTGC
TATGGCCTTG AACATGCGGG ATTAGAGCAA GAGCGTCGTC CGTTACTGCT TGAACCCCAA
GCCCTTAAAT ACGAACAAAC CGCCGATGGT CTCGTGTTGG AGTTTGTATT GCCTGCGGGC
AGTTTTGCCA CATCCTTGTT GAGAGAGTTA GTCAATTATC AAGATGTCAA AGAGCAGCAA
TGGCAAGCGA CACTGGTGCA GGAGCCTGCA CCCGAGACAA CGGATGCTAA TGTAGCGGCT
GATACAATTG AAATTAAGAC TGAAGCTGCG CCTAACATTG AAGCAGAGTC ATGA
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| Protein sequence | MSELHYLYGK PLGTADLRTQ NSDFIVKEIL PFSPTGEGEH HMLHVRKEGL NTVQVAEMIA
KFAKVHPKEV TYAGQKDKNA ITEQWFGVRI PGKETPLWKE LNSERLTILS SSRHSKKLRI
GALVGNRFIL TLRNVTQVED IISRIEKVAQ VGVPNYFGEQ RFGHDGKNLV FGRQMMAGKK
VKDRNKRSMY LSAVRSNLFN TVVSYRLANH GTKPLAGDCV MLAGSKSFFV TPEWDLIVLK
RLIEKDIQLS APLWGRGMML PQGEAAAVET LAMSELADDC YGLEHAGLEQ ERRPLLLEPQ
ALKYEQTADG LVLEFVLPAG SFATSLLREL VNYQDVKEQQ WQATLVQEPA PETTDANVAA
DTIEIKTEAA PNIEAES
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