| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3128 |
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| Symbol | |
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| ID | 5372453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 3732056 |
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| End bp | 3733036 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640831382 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001367322 |
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| Protein GI | 153001641 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCGCA TAAAAAGCAC TGCCGCAGAA GCACTAGTAG ATTTATCCGT AGACACCGTT
GACTTCGACC TTGAAAAAGA AGAAGTTGCA TCCGATTTAG TTCAAGAGCT AGGAATAGAA
CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCTA CTCAACTTTA CCTAGGTGAG
ATTGGTTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAAGCCTTA
AAAGGCTGTG CAAAATCCCG TAATCGCATG ATCGAAAGTA ATTTACGTCT GGTCGTAAAA
ATTGCCCGTC GTTACAACAA TCGCGGCTTA GCACTGCTTG ATCTTATCGA AGAAGGCAAC
TTAGGCTTAA TTCGTGCCGT TGAAAAGTTT GACCCAGAAA GAGGTTTCCG TTTTTCAACC
TATGCGACTT GGTGGATCAG ACAGACCATT GAGCGCGCCA TTATGAATCA GACTCGTACA
ATTCGATTGC CTATTCATGT TGTTAAAGAA CTCAATGTTT ACTTGCGCAC CGCTCGCGAG
TTAGCACAAA AACTCGATCA CGAACCAACG GCTGAAGAAA TTGCCGAAAA ACTACAAGTG
TCGAGTGCAG ATGTCAGCCG TATGCTTAAG CTGAATGAGA AAATCACCTC TGTCGATACG
CCTTTGGGGG GCGATAATGA CAAGGCGCTG TTGGATATTT TAGCCGATGA CGATAACGTT
GGCCCTGACT ATAAAGTGCA AGATGAAGAT ATTTCTAATT CAGTGGTCAA ATGGCTCAAT
GAGTTAAACA CTAAACAAAG AGAAGTGTTA GCCCGCCGTT TTGGTCTGTT AGGTTATGAG
CCTTCTACAC TCGAAGATGT GGGTGCTGAA ATTGGTTTGA CCCGTGAACG TGTTCGTCAA
ATCCAAGTGG AAGCATTGAA ACGTTTACGT GACTTATTAG GATCTCAAGG TTTATCTGTT
GAAGCATTGT TTAGAAACTA A
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| Protein sequence | MSRIKSTAAE ALVDLSVDTV DFDLEKEEVA SDLVQELGIE QQVQDDLQKN LDATQLYLGE
IGFSPLLSAE EEVYFSRKAL KGCAKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN
LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE
LAQKLDHEPT AEEIAEKLQV SSADVSRMLK LNEKITSVDT PLGGDNDKAL LDILADDDNV
GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ
IQVEALKRLR DLLGSQGLSV EALFRN
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