| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3041 |
|---|
| Symbol | |
|---|
| ID | 5370301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 3634895 |
|---|
| End bp | 3635713 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640831283 |
|---|
| Product | pyrroline-5-carboxylate reductase |
|---|
| Protein accession | YP_001367235 |
|---|
| Protein GI | 153001554 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
|---|
| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000943261 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAAC AGAAAATCTG CTTTATCGGT GCCGGCAACA TGACGCGCAG CATCATCAGT
GGCCTAGTTC ATAGCGGCTA TCCTGCTCAA CTCATCCAAG CGACCAATCC TAGCCAAGGT
AAACTCGACG CACTAAAAGC CGATTTAGGG ATTTTGGTTT CTCAAGACAA TTTAGCCGCA
GCGCAAGCTG CCGATGTCAT AGTGCTGTCG GTAAAACCGC AATTGATGCA GCAAGTGTGT
GAAGCATTAC AAACTGTCGA CATGTCGCAA AAGTTAGTCA TCACTATTGC TGCAGGCATT
AAAGCAAAGC GTTATACCGA TTATCTGGCG CAGGATATTA AGCTTATCCG CGCTATGCCC
AATACACCGA TGCAGATTAG TGTGGGCATG ACTGGCCTCT ATGCGCCTCA GGCTATTTCT
ACCGAGCAAA AAGCCATTTG CGATCGTTTG ATGTCAAGCG GCGGCGAAAT TGTGTGGGTT
AATGAAGAGT CAGAATTAGA TCAAGTGATT GCACTATCGG GCAGTTCACC GGCTTATTTC
TTTTTGCTAA TGGAGTCTAT GATAGATGCA GGCAAAGAAA TGGGAATGGA TGAAGACAAA
GCCAGAACTT TAGTGCAGCA AGCCGCGCTC GGCGCTGCTA TGATGGCAAA GCAAAATCCA
CAACTGACCT TAGGTAATCT AAGGGAGAAT GTCACCTCAA AGGGCGGTAC CACCGCACAG
GCGCTGGCGA CATTTGAAGC TGCGGATATG CGTGGTTTAG TAAAAAAAGC CATGGAAAAC
TGCATTAAAC GTGCAGAAGA AATGGCTAAG ACATTTTAA
|
|---|
| Protein sequence | MDQQKICFIG AGNMTRSIIS GLVHSGYPAQ LIQATNPSQG KLDALKADLG ILVSQDNLAA
AQAADVIVLS VKPQLMQQVC EALQTVDMSQ KLVITIAAGI KAKRYTDYLA QDIKLIRAMP
NTPMQISVGM TGLYAPQAIS TEQKAICDRL MSSGGEIVWV NEESELDQVI ALSGSSPAYF
FLLMESMIDA GKEMGMDEDK ARTLVQQAAL GAAMMAKQNP QLTLGNLREN VTSKGGTTAQ
ALATFEAADM RGLVKKAMEN CIKRAEEMAK TF
|
|---|
| |