Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_2936 |
Symbol | fliF |
ID | 5372599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 3519032 |
End bp | 3520714 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640831180 |
Product | flagellar MS-ring protein |
Protein accession | YP_001367133 |
Protein GI | 153001452 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGTCG GATCCAATTC CGACTTAGCT GACCAAGGTG TCCAGCAAGA ACATAAGTCA GGAATGATGG GAAACCTTGG CGGTGTCGAT ATGATGCGTC AAGTAACTAT GATTTTAGCC TTGGCGATTT GTTTGGCCTT AGCCGTATTT GTCATGCTGT GGGCACAGGA GCCTGAGTAT CGTCCATTGG GTAAAATGGA AACTCAGGAA ATGGTTCAAG TGTTAGATGT GCTTGATAAA AATAAAGTTA AGTATCAAAT CGACGTGGAC GTGATTAAAG TCCCCGAAGA TAAATATCAA GAAGTGAAAA TGATGCTGAG CCGCGCAGGC GTTGACAGCC CTGCGGCCAG TCAAGATTTC TTGAATCAAG ACAGCGGCTT TGGTGTCAGC CAACGAATGG AGCAAGCCCG TCTTAAGCAC AGCCAAGAAG AAAACCTAGC CCGTGCGATT GAGCAACTAC AAAGTGTTAG CCGCGCCAAA GTGATCCTCG CGTTACCTAA AGAAAACGTC TTTGCTCGCA ATGCCTCAAA ACCAAGTGCG ACTGTGGTCA TCAATACCCG CCGTGGCGGT TTAGGCCAAG GTGAAGTCGA CGCTATCGTT GATATCGTTG CCTCTGCTGT GCAAGGTTTA GAGCCATCAC GGGTGACTGT GACCGACTCT AATGGCCGTT TATTAAACTC AGGCAGCCAA GATGGCGCGT CTGCGACAGC CCGTCGCGAG CTTGAATTAG TACAGCAAAA AGAAGCCGAG TATCGCACTA AGATTGAATC GATTTTGGTA CCTATCTTAG GTCCTGATAA TTTCACCTCT CAAGTCGATG TCAGTATGGA CTTTACTGCG GTCGAGCAAA CTTCTAAGCG TTATAACCCA GATTTACCGT CTTTACGCAG CGAAATGACC GTTGAAAATA ATACCACTGG CGGCTCTTCG GGTGGGATCC CTGGCGCGCT ATCGAATCAA CCGCCAATGG AATCGAACAT TCCGCAAGAT GCGACTAAAG CGACCGAGTC TGCCACTGCA GGTAATTCGC ACCGTGAAGC AACCCGTAAT TTTGAGTTAG ATACCACTAT TAGCCATACT CGTCAGCAAG TTGGCGCCGT TCGCCGCATT AGTGTGTCGG TTGCTGTGGA CTTTAAACCC GGTGCTGCCG GAGAAAATGG TCAAGTGGCG CGTGTTGCCC GTACTGAACA AGAGCTGACC AATATCCGTC GTTTACTCGA AGGTGCCGTA GGTTTTAGCT CGCAACGGGG TGATGTGTTA GAAGTTGTAA CGGTTCCCTT TATGGATCAA TTGGTTGAAG ACTTGCCAGC ACTAGAACTG TGGGAACAAC CTTGGTTCTG GCGTGCGATT AAGCTCGGTA TTGGTGCACT AGTGATTCTG GTACTGATTT TAGCTGTGGT ACGTCCTATG CTGAAACGCT TAATCTATCC TGACAGTGTG AATATGCCTG AGGATGGCAG ATTAGGTAAC GAATTGGCCG AAATTGAGGA CCAGTACGCG GCAGATACGC TAGGGATGCT CAATACCCAA GAGGCGGAAT ACAGTTATGC CGATGATGGT TCAATTCATA TCCCTAATTT GCACAAAGAT GATGATATGA TTAAAGCTAT CCGTGCGCTC GTGGCTAATG AGCCTGAGCT CTCTACTCAA GTCGTGAAAA ACTGGTTACA AGACAATGGC TGA
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Protein sequence | MIVGSNSDLA DQGVQQEHKS GMMGNLGGVD MMRQVTMILA LAICLALAVF VMLWAQEPEY RPLGKMETQE MVQVLDVLDK NKVKYQIDVD VIKVPEDKYQ EVKMMLSRAG VDSPAASQDF LNQDSGFGVS QRMEQARLKH SQEENLARAI EQLQSVSRAK VILALPKENV FARNASKPSA TVVINTRRGG LGQGEVDAIV DIVASAVQGL EPSRVTVTDS NGRLLNSGSQ DGASATARRE LELVQQKEAE YRTKIESILV PILGPDNFTS QVDVSMDFTA VEQTSKRYNP DLPSLRSEMT VENNTTGGSS GGIPGALSNQ PPMESNIPQD ATKATESATA GNSHREATRN FELDTTISHT RQQVGAVRRI SVSVAVDFKP GAAGENGQVA RVARTEQELT NIRRLLEGAV GFSSQRGDVL EVVTVPFMDQ LVEDLPALEL WEQPWFWRAI KLGIGALVIL VLILAVVRPM LKRLIYPDSV NMPEDGRLGN ELAEIEDQYA ADTLGMLNTQ EAEYSYADDG SIHIPNLHKD DDMIKAIRAL VANEPELSTQ VVKNWLQDNG
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