Gene Shew185_2882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_2882 
Symbol 
ID5369779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand- 
Start bp3460377 
End bp3460916 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content47% 
IMG OID640831126 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_001367079 
Protein GI153001398 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.450988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATGTA GCGCAACTGA GTTAGCCGAA GTGCTGGTGT TTGAACCGCA AGTCTTTGGG 
GATGAACGCG GTTTCTTTAT GGAGACGTTT AGGCAATCCT ATTTTGATGC CTGCTTTGCA 
CAGCGTGGAT TCGAGTCATG TGTGTTCGTT CAGAAGAATC ACAGCCGTTC GCAACGTAAT 
GTCCTGCGAG GCTTGCATTT TCAACGGCGT AAACCGCAGG GTAAGTTAGT GCGGGTCTGT 
GCAGGGAGCA TTTTTGATGT GGCCGTCGAT ATAAGGCCCG ACTCGGCCAC CTATGGGAAA 
TGGGTTGGGC GAGTGCTATC AGCAGAGAAT CATCTGCAAA TGTGGATACC ACCGGGCTTT 
GCTCACGGTT TTTATGTTCT CAGTGATTAT GCTGATGTTA TTTATCAATG TACCCAATAC 
TATGATCCTG AAGATGAAAG CGTTGTCGCT TGGAACAGTG CTGAGTTTGC CATTGATTGG 
CCATTAATTA CTGCACCGAT TTTATCCACG CGAGATAGCA TCGCCAGTTC ACCATCATAA
 
Protein sequence
MKCSATELAE VLVFEPQVFG DERGFFMETF RQSYFDACFA QRGFESCVFV QKNHSRSQRN 
VLRGLHFQRR KPQGKLVRVC AGSIFDVAVD IRPDSATYGK WVGRVLSAEN HLQMWIPPGF 
AHGFYVLSDY ADVIYQCTQY YDPEDESVVA WNSAEFAIDW PLITAPILST RDSIASSPS