| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2852 |
|---|
| Symbol | |
|---|
| ID | 5370055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 3420964 |
|---|
| End bp | 3421620 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640831096 |
|---|
| Product | 3-oxoacid CoA-transferase, B subunit |
|---|
| Protein accession | YP_001367049 |
|---|
| Protein GI | 153001368 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
|---|
| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAT CAAGAGAACA ACTGGCTCAG CGCGTCGCCA AAGAATTAAA AGACGGCTAC
TACGTCAACC TTGGCATAGG CATTCCAACA CTGGTCGCTA ACTATATTCC GAGCGGCATG
GAAGTGATGC TGCAATCGGA AAATGGTCTA CTCGGCATGG GTGAATTCCC TACCGAAGAC
GCCATCGACC CAGATTTAAT CAACGCGGGT AAACAAACCG TTACCGCCGT CAAAGGCGCC
TCATTTTTCT CCTCGGCGGA AAGCTTTGCC ATGATCCGTG GTGGCCATGT GGACTTAACC
GTGCTCGGCG CCTTTGAGGT CGATGTGAAT GGCTCTATCG CCTCATGGAT GATCCCCGGC
AAACTCATCA AAGGTATGGG CGGCGCGATG GATTTAGTCG CTGGCGCTGA AAACATTATT
GTGACTATGA TGCACGCCGA TAAATACGGT AATTCTAAGC TGCTACCCGT GTGCGAATTG
CCGCTAACAG GTTACGGCTG CATTAAACGC GTCGTCACAG ATTTAGCCTT TATCGAAATC
AAAGATGGCG CATTCCATCT ACTAGAGCGC GCGCCAGGTG TCAGCGTAGA AGAAATCGTC
AGCAAAACCG CCGGTAAGTT AATCGTACCT GAGCATGTAC CCGAAATGGT GTTTTAA
|
|---|
| Protein sequence | MALSREQLAQ RVAKELKDGY YVNLGIGIPT LVANYIPSGM EVMLQSENGL LGMGEFPTED
AIDPDLINAG KQTVTAVKGA SFFSSAESFA MIRGGHVDLT VLGAFEVDVN GSIASWMIPG
KLIKGMGGAM DLVAGAENII VTMMHADKYG NSKLLPVCEL PLTGYGCIKR VVTDLAFIEI
KDGAFHLLER APGVSVEEIV SKTAGKLIVP EHVPEMVF
|
|---|
| |