| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2818 |
|---|
| Symbol | |
|---|
| ID | 5372151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 3374133 |
|---|
| End bp | 3375416 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640831046 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001367015 |
|---|
| Protein GI | 153001334 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGG CTTCTTCCTC TGCGGCAAGC TTTGCCCAAC TCGGCATTAT TGCACCTTTG
CTAAATCGAC TAACCGAATT AGCGTATGTT TCGCCCACAC CAGTACAGGC GGCGACGATT
CCCGCTGTGC TCGCTGGGCG GGATGTGTTA GCCGGCGCCA ATACGGGCTC GGGTAAAACG
GCAGCCTTTG CCGTGCCGCT GTTGCAGCAA CTTGTTGAAG CAAAAACAGA CGATAAGACA
GGCGCTTATG TTCGTTGTTT GGTCTTAGTA CCCACCCGCG AATTAGCCCA GCAAGTCGCA
GACAGCTTTC TGTCCTATGC CTCGCATTTG AATGGCAAGC TAAAAATCGT TGCCGCGTTT
GGCGGTGTGT CAGTTAATGC GCAAATGCAG AGCCTACGCG CTGGTGCTGA CGTATTAGTG
GCAACGCCAG GGCGTTTGTT AGATCTGTTG TCCAGCAATG CCATCAAACT TAACCGCGTT
AGCGCCTTAG TGCTCGATGA AGCTGACCGT ATGTTAAGCC TTGGTTTTAC CGAAGAATTA
GCCCAAGTGC TCGACGCGTT GCCCGCCAAG AAACAAACCT TATTATTCTC AGCGACATTC
CCAGAAGAAG TCCGTGAATT AACGGCAAAA CTGCTGAATG CTCCGCTTGA ATACCAATTG
CAAAGTGAAC AAGAAAGCAC GATTCATCAG CGGGTGATTA CCGTTAATCG TCCGATGAAA
ACCGCATTAT TGGCGCATCT GATTAAAGAA CATGAGTGGT CACAGGCGTT GATTTTTGTG
AGTGCCAAAA ATACCTGTAA TCACTTAGCG CAAAAGTTAT CTAAACGTGG GATCAGTGCC
GAAGTCTTCC ATGGCGATAA AGCCCAAGGC GCACGTACGC GAGTGCTCGA CGGGTTTAAA
AATGGTGAGA TCAGTGTGTT AATCGCTACT GACATTGCCG CCCGTGGTAT CGATATCGAT
AAACTGCCTG TGGTGATCAA CTTTGATTTA CCAAGAAGCC CAGCAGATTA TATGCATCGC
ATTGGCCGTA GTGGCCGCGC CGGTGAAGCG GGCTTAGCTG TGACCTTGAT TTCCCATGAG
GATTATCACC ACTTTGGCGT GATAGAGAAA AAGAACAAGC TTAAGTTAGT GCGTGAGCAA
ATTGTCGGTT TTGAAGCCGA TGACGAAATG CCAGCCGAAC TGTTAGAACA AGCTAAACCT
GTCGCCAAGC CCGAAGGTAT GGGTAAAAAA AAACGTAAAC AGTTACCGCC TGCCAATGCT
GAATTTTGGG GTAAAAAATC TTAA
|
|---|
| Protein sequence | MTQASSSAAS FAQLGIIAPL LNRLTELAYV SPTPVQAATI PAVLAGRDVL AGANTGSGKT
AAFAVPLLQQ LVEAKTDDKT GAYVRCLVLV PTRELAQQVA DSFLSYASHL NGKLKIVAAF
GGVSVNAQMQ SLRAGADVLV ATPGRLLDLL SSNAIKLNRV SALVLDEADR MLSLGFTEEL
AQVLDALPAK KQTLLFSATF PEEVRELTAK LLNAPLEYQL QSEQESTIHQ RVITVNRPMK
TALLAHLIKE HEWSQALIFV SAKNTCNHLA QKLSKRGISA EVFHGDKAQG ARTRVLDGFK
NGEISVLIAT DIAARGIDID KLPVVINFDL PRSPADYMHR IGRSGRAGEA GLAVTLISHE
DYHHFGVIEK KNKLKLVREQ IVGFEADDEM PAELLEQAKP VAKPEGMGKK KRKQLPPANA
EFWGKKS
|
|---|
| |