Gene Shew185_2805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_2805 
SymbolsecD 
ID5372528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp3361687 
End bp3363537 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content50% 
IMG OID640831033 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001367002 
Protein GI153001321 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000153559 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGA TGCTCGTCAT CGCCATAGGT 
TGTTTCTATG CCGTACCGAA CCTTTTTGGT GAAGATCACG CGGTGCAAGT GGTGGCGACT
CGAGGTGCTG AAGTCACGGC ATCAACCCAA GCCAGTGTGA ACGAGCTGTT AGCCAGTAAG
GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGTCAGT TGTTGGTCCG TGTGCAAAAT
GCGGATCAAC AGCTACTGGC GAAAGAATTA ATTGCTGACA GCTTAGGTGA CAAGTTCACT
GTGGCGCTCA ACTTAGCCCC AGCGACGCCT AAATGGCTCG AGTCAATGGG CGGCAGCCCA
ATGAAACTCG GTCTCGACCT TCGCGGCGGT GTGCATTTCT TAATGGAAGT GGACATGGGC
GAAGCGATTC GCAAGATGGA AGAGGCTAAA GTTGCCGATT TCCGTTCACA ATTACGCGAA
GAGAAAATTC GTTATGCTGG TATTCGTAGC AATACCACAG GTATCGAAAT CAAGTTCCGT
GATGCTGAAA GTCTCGCGAG TGCAGAGCGT TTCCTTAAGT CTCGCAGTAA AGATATGGTG
TTCACTGATG CTAGCCGTGG CGAAGATTTT GCCCTGCAAG CTGTGATGAG TGACGTGTAC
CTTAAGCAGA TTAAAGAAGA AGCACTGCAA CAAAACATTA CTACCATTCG TAACCGTGTA
AACGAGTTAG GTGTGGCTGA GCCTGTAGTA CAACGTCAAG GCGCCGAGCG CATTATCGTT
GAGCTGCCAG GTGTGCAAGA TACGGCTCGC GCCAAGGAAA TCTTAGGTGC AACCGCATCG
ATTGAATTCC ACATGGTCGA TGACAAAGCC GATCCTAATG CTGCGCAATC TGGCCGTTTA
CCAGCGGGTT CTGAAGTGTA CCAGCGCCGC GAAGGTGGCA CTGTGATATT GAAGAAAGAA
GTTATGCTGA CCGGTGATCA TATCACGGGC GCACAACCTA GCTTTGACCA GTACAGTCGT
CCACAGGTTA GCATCAACCT TGATGCGAAA GGCGGCACCA TTTTCTCTGA CGTGACCAAA
GACAACATAG GCAAGCCTAT GGCGACATTG TTCATCGAAT ATAAAGATAG TGGTGAGCGT
AATGCCGACG GCAGCGTTAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT TGCGACCATT
CAAGCGCGTT TAGGCCGTAA CTTTGTGATC ACTGGCTTAA GCCATGGTGA AGCACAAAAC
CTCGCGCTAT TACTGCGTGC GGGTGCCTTG ATTGCCCCAG TGTCGATTGT TGAAGAACGT
ACCATTGGTC CAAGCTTAGG TGCTGAAAAC ATTCAAAACG GTGTGCAAGC TATGGTCTGG
GGTATGGCAG TTGTCTTACT CTTTATGCTG GTTTACTACC GTGGCTTTGG TCTTATCGCC
AACATAGCGC TAACCGCAAA CTTAGTCATG GTGGTGGGCG TAATGTCTAT GATCCCTGGC
GCAGTGTTAA CCCTACCGGG TATTGCCGGT ATGGTGTTGA CTGTGGGTAT GGCGGTTGAC
GGTAACGTGC TGATCTATGA GCGTATCCGT GAAGAATTAC GTGCGGGCCG TAGCGTTCAG
CAGGCCATCC ATGAAGGTTA TGGTAACGCA TTCTCCACCA TCGCCGATGC GAACATCACC
ACTTTCCTAA CGGCGCTGAT TCTGTTTGCC GTAGGTACGG GCGCTGTTAA AGGCTTCGCG
GTGACCTTGA TGATAGGTAT TGCGACTTCC ATGTTTACCG CAATCGTGGG TACTCGCTCA
ATCGTTAACG CGATTTGGGG CGGTAAGCGC GTGAAGACTC TGTCTATCTA A
 
Protein sequence
MLNKYPMWKN IMVMLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ASVNELLASK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKEL IADSLGDKFT VALNLAPATP KWLESMGGSP
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRS NTTGIEIKFR
DAESLASAER FLKSRSKDMV FTDASRGEDF ALQAVMSDVY LKQIKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRL
PAGSEVYQRR EGGTVILKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSDVTK
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IQNGVQAMVW GMAVVLLFML VYYRGFGLIA
NIALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTAIVGTRS
IVNAIWGGKR VKTLSI