| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2804 |
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| Symbol | secF |
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| ID | 5372527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 3360727 |
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| End bp | 3361674 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640831032 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001367001 |
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| Protein GI | 153001320 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00594045 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAAA TTTTATCTTT AAAACATACG GTAAACTTCC TCCGTCATGC ACTGCCTATC
AGTATTATGT CGGCTGTATT GGTGCTGGGC TCGCTGGTTT CGCTCGCGAC CAATGGCATC
AACTGGGGTC TTGATTTCAC TGGCGGTACC GTCGTTGAAA TGGAGTTCAC AAATCCGGTC
GATTTAAACG CCCTGCGGGT GCAACTGACG ACGCCTGATT CTGAAGGCGC GATTGTGCAA
AACTTCGGTT CTAGCCGTGA CGTATTAGTA CGTTTACAGG TGAAAGAAGG CGTTAGGAGT
GACGTGCAAG TTAAGTCTGT CATGGAAGCT GCGCAGAAAG TTGATCCACA GGTTCAGCAG
AAGCGTGTTG AGTTCGTTGG CCCACAAGTG GGTAAAGAAC TGGCTGAGCA AGGCGCTTTA
GCGGTATTAG TCGCGCTTAT CTGTATCATG ATCTATGTGT CATTCCGTTT CGAATGGCGC
CTAGCGTTTG GTTCAGTGGC AGCATTGGCG CACGACGTGA TCGTGACTTT AGGCGTGTTT
TCGGTATTCC AATTGGAATT CGACTTGACC GTTCTGGCGG GTCTATTGAC GGTTGTGGGT
TACTCACTCA ACGATACTAT CGTGGTATTT GATCGTATCC GTGAAAACTT CCTTAAGATG
CGTAAAAGCG ACCCTGAAGA AGTGGTGAAT ACTTCAATTA CTCAAACCAT GAGCCGTACA
ATCATCACCA CAGGTACAAC CTTAGTGGTG GTCGTAGCCT TGTTCCTTAA GGGCGGCACT
ATGATCCATG GCTTTGCGAC TGCATTGCTG ATGGGTATTT TTGTGGGTAC GTATTCTTCT
ATCTATGTGG CGAGTTTCTT GGCCATCAAA CTGGGTATTA ATCGTGAACA CATGATGCCA
GTTGAGATTG AGAAAGAAGG CGCAGACCAA CCTCCTATGA TGCCTTAA
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| Protein sequence | MLEILSLKHT VNFLRHALPI SIMSAVLVLG SLVSLATNGI NWGLDFTGGT VVEMEFTNPV
DLNALRVQLT TPDSEGAIVQ NFGSSRDVLV RLQVKEGVRS DVQVKSVMEA AQKVDPQVQQ
KRVEFVGPQV GKELAEQGAL AVLVALICIM IYVSFRFEWR LAFGSVAALA HDVIVTLGVF
SVFQLEFDLT VLAGLLTVVG YSLNDTIVVF DRIRENFLKM RKSDPEEVVN TSITQTMSRT
IITTGTTLVV VVALFLKGGT MIHGFATALL MGIFVGTYSS IYVASFLAIK LGINREHMMP
VEIEKEGADQ PPMMP
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