| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2788 |
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| Symbol | |
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| ID | 5370053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 3342525 |
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| End bp | 3343094 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640831016 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001366985 |
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| Protein GI | 153001304 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00167883 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATGT TTGCTAACTG GCGTAAGAAA TCCGTCGAGC CCGCGGTCTC TTCTGACATG
CTAAGTAAAC AACGACGATA CAACAGCCTA GTCAAGGCGC TACATGCAGA CATCTTCCGC
TACGCCTACT GGTTATGCGG CGATAAACAC GTGGCTGAAG ACATTACCCA AGAAACCTTC
TTGCGGGCGT GGCGCTCTTT GGATTCCCTC AAGGATGATA AAGCGGCGAA GGCATGGCTG
ATCACGATTC TTAGGCGTGA GAATGCGCGG CGTTTCGAGC GTAAACAGTT CGATTATTCC
GACGTTGAGC AAGATACCTT AGAAGACAAT ATCTCCAATA GCAGTGAAGA GCAGACCGAG
CAATACCTGA TCCGTCGGCA AATAGGCAAG CTGGATATCG AATACCGCGA GCCACTCTTA
CTGCAACTGA TTGGTGGCTT TAGCGGCGAT GAAATTGCCG AGCTGATGGA GCTCAATCGC
AACACCGTAA TGACGCGTTT ATTTCGGGCG AGGAGCCAAT TGAAAGAATT ACTTGAGAAG
AATGATGTGA GAGGTCAATC CAATGGATGA
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| Protein sequence | MKMFANWRKK SVEPAVSSDM LSKQRRYNSL VKALHADIFR YAYWLCGDKH VAEDITQETF
LRAWRSLDSL KDDKAAKAWL ITILRRENAR RFERKQFDYS DVEQDTLEDN ISNSSEEQTE
QYLIRRQIGK LDIEYREPLL LQLIGGFSGD EIAELMELNR NTVMTRLFRA RSQLKELLEK
NDVRGQSNG
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