| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2774 |
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| Symbol | |
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| ID | 5373710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 3324387 |
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| End bp | 3328646 |
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| Gene Length | 4260 bp |
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| Protein Length | 1419 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640831002 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001366971 |
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| Protein GI | 153001290 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAAAG CACTCTTTAA AATCGTCTTG CTCGCTTTCT TTGGCTTGCA TGCATTCGAA
GACGTAAACG CATCTCCCTT TTCTGATAAA TCTCCAATTA TTCTCCAATC ACAATCTTTT
GGTGTCCCAC AAGGACTTTC CCAAAGCACA GTTACGTCTA TAGTCCAGGA CCATGATGGC
TATCTATGGA TTGGAACATT TAATGGACTT AATCGATTTG ATGGGAAAAA CTTTAAGCAT
TTTTATGCTA ATGATGCCAG AACAGGCCTT CCCAGTTCTT TTATCAGAAG TTTACTCATT
GATGAACAAG GCGTGTTATA TGTTGGAACC GATAGTGGTC TAGTCGTATA TGATAAACTG
CAAGAATCAT TTTCTCATTA TGGCCTATCG GTAAATGACT CCCCAGTTTG GAGCCTCAAC
TCAAGTGATA AGAGTTTAAT TGTTGGAACC AACAAAGCAA TTATTGATAT AAGTAACAAA
GAGCAAACTT ATGAACTTTC AAAGAAAGGC CTAAGTGAAA TTAAAAAAAC GATAAAAGTA
GGCGACGATT ATTATATAAG AGACTATGCA GGTACATTAT TTGAACTAAG CGGGAGTGAG
TTAAAAGAGA TAGCTCGAAA AACAATGGAT TTCGAGCAAA AGAATGACAC GACAATGCTA
ATATCATTCA GTGATGGATT ATATGAATAC GAAGGCAATG AAATAGTAAA AATAGATCCA
CGAGCATTCT CTCAACTCAC AAAATATAAA AATACGATTT ATGGCTTCAC TAACGAAAAC
ATTGTTAACA TTTCTAAAAA TGCCATTGTA GGACTTCTAT CTTCAGATCG CACTGACAAA
ATATCTTCAT TTCTTGCAAC AGAAGATATG TTTATATTGG GCAGCATTGA TCAAGGCGTT
ATTATTATAA GAAACGTTAA TAACCTAGTA CAGCAAACTA ATTTAGTAAA AGATAACGCC
TGGCATCTTA CAAAGAACCC TCAGGGATTT CTCGTCTCAT CCGAATCCGA AAAAATAGAT
CTTTTTGACA ACAACTTTAG TTTAATAGAA AGTTTCGACA CACAAAGTCA AGGATATAAA
TATGCAATAT TGAATGATGA CGGGCTCTAT TTCGGGACTA ATAATGGATT GTTTTTGAAG
AGAATAGATA CTGTAAAATT GATTAGTAAA AAATCAATCT CGTCCTTATC TAGCAATGAA
GATAACTCGT TAATTGCCGC AGGAACATCT GATGGAAAAG TATTGATTAT CAGTAAAGGA
GAAATAATCA GTAGTGTTGA CACTAAAAAA AACGAGCCAA TTTTTGATAT TGAATTAGAG
TCGACAGATA TTATTTATGT TGCAGGTCAG GGGGGCCTTA AAGAATATAA AAATGGGTTA
TTAAAAAACT TAAGTGAAGA AATAACATAC AGCATAGTAA AAAGCGATAA TGGAATTTAT
TTTGGAACAT CTACATCGTT AATGTTTTAC AATACAAAAA ACAATAGTAC TTCTGAAGTG
TTTTCTAATA AAAAAGAAAT TTACTCCATC GTTGACAGTA ATGGTTTTTT AACTGCGGCA
TCACTGAGTG AAGTTATTAT ATATGAAAAG AAAAACAAGA AGTCATACAC CTTAAAAACA
TCAAATGGAA GTCAGTATGA ATATAACTCG CCGAGTGGAA TAGATGTTAA TGGTTATATT
TTACTTGCTG GTATAAATGG AGTTAGCTTA GTATCTCCAA TTAATACAGT AAACTATATT
AATAATAGCA AGATATACAG AACTGAAATA TCAGAATTTT TAGTCTTTAA TATAACACAA
GAAAAAGAAA GCAACTTCTT TGACAAAGAA AACCAAAATA AAAATGAAAT AACCTTAAAA
TATTCAGATT ACCCATTTTC ATTTAACTTT ATATCACCTA TGTCAGACGA CTCATCTACC
AACTACCACT ACAGAATGTA TGGCCTTTCC GATACATGGA TATCAGCAAA TGGAACAAAC
TCTGCTACAT ATACAAACCT ATCGCCAGGT AAATATAATT TTCAAGTATA TGCCGTTAAC
TCCCTTTCTG GTGAAAAAGC AGCAACAAAA GAGCTTACTG TCATAATAAC ACCTCCTTGG
TGGTCATCAT TTCAAGCAAA ATCGATATAT GTAGTAATTA CAATATTCAT TTCATTTGTG
ATAGTAAAAG CCATTTTACG TCGTAGGGAG ACGCAAAGAC AAATTGTCCT CAGTGAAGAA
AGATTAAAAC TTTCCTTATG GGGAAGTGGT GATGAAATGT GGGACTGGGA TATAGAAACT
GGCAACATTT TCCGCTCGAA TATCTGGGGA GCACTTGAAT TTCCGCGTGA TGGACATCGC
TCGGGTAAAT CGGATGAAGA GAGTAATATA CATCCAATGG ATCAAGAACG TGTTCGAGAA
GCGCTCAATA AGCATTTTTA TGGTGAAACA GATCATTTCG AAGCCGCATA CCGAGTAAAA
GGTAAAGACG ACAATTGGGT ATGGATCTTA GACCGTGCCA AAATTGTAGA GCGGGATGAC
AAAGATAATG CCCTGCGTAT GACAGGTACA ATTAAAAATA TTAGTCAATT TAAACAAAAA
GAAGAGCAAC TAAAACTCTT TGAAAAAGCC ATTGAAAATA TTTCTGAAGG CATGTTTATC
CTCGACGGTG AATACCGTTT TGTCGAAGTT AATGAAGCTT GCTGTAAGAT TTCATTACGT
AACAGAACTG ATTTTATTGG CAACGTACTC ACATTTGATT TATATCCTGA AACCTTCTCC
ACCCAAATCA GGACCATGTT GAAGCAACAA GGTCGCTGGG CAAATGAAGT CGAAGCCGCA
AGAGGAGATA AAAGTCACTT CCATATGGAG CTCACTATCG ATGCTATCTA TGATGAGTTA
GGCGAATTGT CACACTATGT CGGGGTTTTT TCGGATATTT CGAGACGGAA ACAGCAAGAA
GAAGAGCTTA GAAAACTAAC CAATAATGAT CTCTTAACCG GACTCCCAAA TCGCTCCAAC
TTACAAGTGA CCTTGAGTAA CCTAGTGAAT CGAGAAATAG CCCATGCGCT AATGGTGCTT
GATCTTGATA ATTTTAAACG TATTAATGAT TCCTTAGGTC ACCAGATTGG AGATACATTA
TTAAAGCTCG TTGCAGCTCG CATTAAGTCC TTACTTCCTA AAAATACCAG TATTTACCGT
CTAGGCGGAG ATGAATTTGC CATTGTATTA GATAAAGGCT CAGATATAAG CGCCAGCGCT
GCGATTGCTA ACCGTATTAT CGAAGGGTTA AAACCCGCTT TTGAAGTAAG TAATGAACAA
CTAGTCCTAG GATTAAGTAT TGGTATAGTG CTATACCCAG AAGATGAGCA AAGCGAGCAA
GCATTACTGA GGAAAGCTGA CATTGCTATG TACCATGCTA AGTCAGCGGG AGGTAATTGC
TATCAGTTTT ATTCAGAGTC ATTAAATCAA CATGCGATTA GGCAGTTAGA AATAGAGAAT
CTTATCCGTG AAGGCTTAAA AGATGATCTA TTTGAAGTTT ATTATCAGCC TAAGGTTGAT
CTTAAGCGCG GTAAAATTGC AGGCATGGAG GCTTTAGTCA GATTAAATCA TCCAGTACAT
GGCTTGATAC CCCCAAATGA TTTTATTCCA CTTGCTGAAG AAAACGGTTT AATTGTTGAA
ATTGGTGAAA TCGTCCTACG CAAAGCCTGT TTCGCAGCGC AGAAATGGCG TGAACAAGGA
ATATTCAGCG GCAGAGTCGC CGTCAATTTA TCGTCACGTC AATTTGCACT CCCCGATATC
CAACAACGAA TAGAGTCAAT TTTAAGACTC ACCAAACTCC CCGCTTGTCA CCTTGAATTA
GAAATAACTG AAGGTACTGT CATTAAGCAG CCGGAAACGG CGATTATTGT CATGCAGCAA
CTGGCTAAAA TGGGCGTTAG TTTGGCACTC GATGATTTCG GCACTGGGTA CTCGTCCCTT
TCATACTTAA AACGTTTCCC GATTCATACT TTAAAAATTG ATAAAGCTTT TGTTGACGAT
ATTGATAAGT CTGATCGCGA TCTCAAAATG GTCGATTCTA TTATCACTAT CGCCCATAAC
ATGGGGCTTT CTGTTGTGGG AGAAGGGGTA GAACAAGCAG CACAATTGAA TATTTTACGA
GCACTCAACT GTGAAGAAAT TCAAGGCTAT ATTTTTAGTA AGGCCATAAA AGAGACCGAA
TTTACCCTGT TACTCCAAGA AGACATGATA AAGCCAAACA CAAAAAGCAA CATTACCTAA
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| Protein sequence | MPKALFKIVL LAFFGLHAFE DVNASPFSDK SPIILQSQSF GVPQGLSQST VTSIVQDHDG
YLWIGTFNGL NRFDGKNFKH FYANDARTGL PSSFIRSLLI DEQGVLYVGT DSGLVVYDKL
QESFSHYGLS VNDSPVWSLN SSDKSLIVGT NKAIIDISNK EQTYELSKKG LSEIKKTIKV
GDDYYIRDYA GTLFELSGSE LKEIARKTMD FEQKNDTTML ISFSDGLYEY EGNEIVKIDP
RAFSQLTKYK NTIYGFTNEN IVNISKNAIV GLLSSDRTDK ISSFLATEDM FILGSIDQGV
IIIRNVNNLV QQTNLVKDNA WHLTKNPQGF LVSSESEKID LFDNNFSLIE SFDTQSQGYK
YAILNDDGLY FGTNNGLFLK RIDTVKLISK KSISSLSSNE DNSLIAAGTS DGKVLIISKG
EIISSVDTKK NEPIFDIELE STDIIYVAGQ GGLKEYKNGL LKNLSEEITY SIVKSDNGIY
FGTSTSLMFY NTKNNSTSEV FSNKKEIYSI VDSNGFLTAA SLSEVIIYEK KNKKSYTLKT
SNGSQYEYNS PSGIDVNGYI LLAGINGVSL VSPINTVNYI NNSKIYRTEI SEFLVFNITQ
EKESNFFDKE NQNKNEITLK YSDYPFSFNF ISPMSDDSST NYHYRMYGLS DTWISANGTN
SATYTNLSPG KYNFQVYAVN SLSGEKAATK ELTVIITPPW WSSFQAKSIY VVITIFISFV
IVKAILRRRE TQRQIVLSEE RLKLSLWGSG DEMWDWDIET GNIFRSNIWG ALEFPRDGHR
SGKSDEESNI HPMDQERVRE ALNKHFYGET DHFEAAYRVK GKDDNWVWIL DRAKIVERDD
KDNALRMTGT IKNISQFKQK EEQLKLFEKA IENISEGMFI LDGEYRFVEV NEACCKISLR
NRTDFIGNVL TFDLYPETFS TQIRTMLKQQ GRWANEVEAA RGDKSHFHME LTIDAIYDEL
GELSHYVGVF SDISRRKQQE EELRKLTNND LLTGLPNRSN LQVTLSNLVN REIAHALMVL
DLDNFKRIND SLGHQIGDTL LKLVAARIKS LLPKNTSIYR LGGDEFAIVL DKGSDISASA
AIANRIIEGL KPAFEVSNEQ LVLGLSIGIV LYPEDEQSEQ ALLRKADIAM YHAKSAGGNC
YQFYSESLNQ HAIRQLEIEN LIREGLKDDL FEVYYQPKVD LKRGKIAGME ALVRLNHPVH
GLIPPNDFIP LAEENGLIVE IGEIVLRKAC FAAQKWREQG IFSGRVAVNL SSRQFALPDI
QQRIESILRL TKLPACHLEL EITEGTVIKQ PETAIIVMQQ LAKMGVSLAL DDFGTGYSSL
SYLKRFPIHT LKIDKAFVDD IDKSDRDLKM VDSIITIAHN MGLSVVGEGV EQAAQLNILR
ALNCEEIQGY IFSKAIKETE FTLLLQEDMI KPNTKSNIT
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