| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2531 |
|---|
| Symbol | |
|---|
| ID | 5372963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 3024504 |
|---|
| End bp | 3025370 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640830744 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001366731 |
|---|
| Protein GI | 153001050 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.389044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATC CACAGTGGTT ACACACCTTT GCTGTTCTGG TCGAGAAAGG TAACTTCACT
CGAACCGCCG AAGCCATTGG TATCACCCAA GCGGCTGTGA GCCAACATAT CAGCCGCTTA
GAAGAAGAAT ATGGCACACT GTTTTTACGC CGCCCCCGTC AACTTGAAAT CACTCCGATT
GGCGAAAACC TGCTGACCTA CGTTAAAGAC GTCGAATGCG CGCAAAAACG CTTACAGCAG
AAACTGATCC ATGATGATGC AGAGGTCGGC GACATTAGCC TCATCACTCC GGGGAGCATT
GGTTTAACAC TCTTTCCGCT GTTAATCGAA CTTCAACAAG CCTTTCCGGC GTTAAACATT
CGCCACCGTT TTGCCCCTGA CAGTGAAATA GTCGCCTCGG TATTAGCCAA TGAACATGAA
ATCGGCATGG TGACCTTAAA ACCTTCCGAT CCTCGCATTC ACAGCACGCA TTTCACCGAA
GAGCCGCTTG AGCTCGTCGT ACCTGCGTGC CACAAACAAA ATGAATGGGT TGATTTACAA
CGGCTAGGGT TTATCTCCCA TCCCGATGGC GAGGCCATGG CAACTCGGTT ACTTAGCCGA
AAATATCCAA GTAATCCCGG TATTCAAGAC ATTCCCTGTA AAGGATTTAC CAACCAAATC
AGCCTGATCC TCGAACCTGT CGCGAAAGGA CTAGGATTTA CAGTTATACC GCAATACGCA
CGCAAAGCCT TTGAACGACA ACAAGATATC TATGTTGTTG AATGTGGCAG CCAAGTTGTA
GACACCATTT GGCTTATCCA CCGCGCGGAA TGGCCCTTGT CACGCAGAGC CCAAAAAGCG
ATCGCGTTTT TAAAGGAGAA GATATAA
|
|---|
| Protein sequence | MINPQWLHTF AVLVEKGNFT RTAEAIGITQ AAVSQHISRL EEEYGTLFLR RPRQLEITPI
GENLLTYVKD VECAQKRLQQ KLIHDDAEVG DISLITPGSI GLTLFPLLIE LQQAFPALNI
RHRFAPDSEI VASVLANEHE IGMVTLKPSD PRIHSTHFTE EPLELVVPAC HKQNEWVDLQ
RLGFISHPDG EAMATRLLSR KYPSNPGIQD IPCKGFTNQI SLILEPVAKG LGFTVIPQYA
RKAFERQQDI YVVECGSQVV DTIWLIHRAE WPLSRRAQKA IAFLKEKI
|
|---|
| |