| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2515 |
|---|
| Symbol | |
|---|
| ID | 5372044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 3003486 |
|---|
| End bp | 3006743 |
|---|
| Gene Length | 3258 bp |
|---|
| Protein Length | 1085 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640830728 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001366715 |
|---|
| Protein GI | 153001034 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0795793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAATTA TCAGCACTTC CGTTAAACGG CCAGTCACGG TATGGATGTT CATGCTGGCG
GTGATTTTAT TCGGCATGGT GGGATTTTCC CGCTTAGCGG TAAAGTTACT GCCAGACTTA
AGCTATCCCA CATTAACCAT CCGCACTATG TATGACGGTG CGGCGCCAGT AGAAGTTGAA
CAGCTCGTCT CTAAACCGAT TGAAGAAGCC GTTGGCGTGG TCAAAGGCTT ACGTAAAATC
AGCTCTATTT CGCGCTCAGG CATGTCAGAT GTAGTGCTCG AGTTTGAATG GGGCACCACA
ATGGACATGG CGAGTTTAGA TGTGCGCGAA AAACTCGACA CTATCGCCCT GCCTTTGGAT
GTTAAAAAGC CATTATTACT GCGCTTTAAC CCCAACCTTG ACCCAATCAT GCGTCTCGCG
TTGTCTGTCC CCAATGCTTC AGAAGCCGAT CTTAAGCAAA TGCGCACCTA CGCAGAAGAA
GAGCTTAAGC GTCGCTTAGA AGCGCTTTCT GGGGTCGCCG CCGTGCGTTT ATCCGGCGGC
CTAGAGCAAG AAGTACACAT TCAGCTCAAT CAAGAAAAAC TATCGCAACT TAATCTCAAT
GCCGACGACA TTAAACGTCG TATTAATGAG GAAAACATCA ACCTCTCTGC CGGTAAAGTG
ATCCAAGGTG ATCGCGAATA CTTAGTGCGC ACACTTAATC AATTCAATTC ACTAGATGAA
CTTGGCCAAG TGATCGTCTA TCGCGACGAG CAAACCTTAG TGCGTTTATT CGAAGTCGCC
ACCATTACCG ATGCCTTTAA AGAGCGTAGC GATATCACCC GTATCGGTAG CCAAGAATCG
ATTGAACTGG CGATTTATAA AGAAGGTGAT GCTAACACTG TCGCCGTCGC CAAAAAACTG
CGCGATGAAC TCGTCAAAAT TAATCAAGAT CCTAAGCAAA ACAAACTCGA AGTAATTTAC
GATCAATCCG AGTTTATCGA AAGTGCGGTC AGTGAAGTCA CCTCTTCGGC GCTGATGGGC
AGTTTATTAT CTATGCTGGT GATTTACCTG TTCCTGCGTA ACATCATTCC AACGCTGATT
ATCTCCATCT CGATTCCCTT CTCGGTTATC GCTACCTTTA ACATGATGTA TTTTGCCGAT
ATCAGCTTAA ACATCATGTC ATTAGGTGGT ATTGCACTCG CCATTGGTCT GTTAGTCGAT
AACGCCATTG TGGTATTAGA GAACATCGAC CGCTGTCGCA GCGAAGGCAT GAGTAAGTTA
GACGCTGCAG TCACAGGAAC TAAAGAAGTA GCGGGCGCGA TTTTCGCCTC CACACTGACG
ACCCTTGCGG TATTTGTACC CTTAGTGTTT GTAGATGGGA TTGCCGGTGC CCTGTTCTCC
GACCAAGCGC TGACGGTCAC CTTTGCTTTA TTAGCCTCGC TGTTAGTCGC CTTAACCTCT
ATCCCTATGC TGGCATCACG CGAAGGCTTT AAAACCTTAC CCGCGCTGAT AAAAACCACG
CCAAAGGATA AACCCACCAC TAAAATGGGT AAACTTAAGC ACTACAGCGC GACTGTGTTC
TCATTCCCTA TTCTGTTGAT ATTTAGTTAC TTACCTAGTG CGCTACTCAC CTTAGTGCTG
ATTTTAGGCC GCTTCTTCTC GTGGCTAATC GGTCTTATCA TGCGTCCTTT GAGTTCAGGA
TTTAACTTTA TCTACCACAG TATCGAGAAG GTTTATCACA AGCTGCTGGC CTCGGCGCTG
CGTCAACAAA TGACCACGCT ACTGCTCACC ATTGCGATAA CGGGCGCATG TATTAGCCTG
TTACCTCGCC TAGGTATGGA GCTTATTCCG CCAATGAATC AGGGCGAGTT TTATGTAGAA
ATCCTACTGC CACCAGGTAC GGCGGTGAGT GAAACCGACA AGGTTTTGCA ACAACTCGCG
TTGTCTATCA AGGACAGACC CGAAGTCAAA CATGCCTATA GCCAAGCCGG TAGCGGTGGT
TTGATGACTT CAGATACTGC CCGCGGTGGT GAAAACTGGG GCCGTTTACA AGTGGTACTG
ACAGATCACA GTGCCTATAA CGCGATCACT CAAGTGCTGC GTGATACCGC GCGCCGCATT
CCTGAACTTG AAGCAAAAAT TGAGCAACCT GAGTTATTCA GCTTTAAAAC GCCACTCGAG
ATTGAGCTCA CAGGTTACGA TTTGAACTTG CTCAAGCGCA GTGCCGATAG TCTAGTCAAA
GCATTATCCG CATCAGATCG TTTTGCTGAC GTGAATACCA GTCTGCGTGA TGGTCAACCT
GAGCTGAGTA TCCGTTTCGA TCATGCAAGG TTAGCAGCGC TCGGAATGGA TGCGCCAACA
GTTGCGAACC GCATTGCTCA GCGCGTTGGC GGTACCATTG CCAGCCAATA CACGGTACGT
GATCGTAAGA TTGATATTCT GGTGCGCAGT GAACTCGCCG AGCGCGATCA AATCAGCGAT
ATCGATGCCT TAATCATCAA CCCGAACAGC AATCAACCTA TTGCTTTAAG TGCGGTTGCC
GAAGTGTCAT TACAATTAGG CCCCTCGGCG ATTAACCGTA TCAGCCAGCA ACGTGTGGCA
CTGGTGTCGG CTAACCTCGC CTACGGTGAC TTAAGCGATG CGGTGGCACA GGCGCAGCAA
ATACTGTCGC AACAGGTACT ACCCGCTTCG GTTCAAGCCC GCTTTGGTGG TCAAAATGAG
GAAATGGAGC ACTCATTCCA GTCACTCAAA ATTGCCCTTA TCTTAGCGAT TTTCTTAGTG
TATTTAGTGA TGGCGAGTCA GTTTGAGTCA CTGCTACATC CCTTGCTTAT CCTCTTTGCC
GTACCCATGG CATTGGCGGG TAGCGTGCTG GGCCTGTATA TCACCCAAAC CCATTTGAGT
GTGGTGGTGT TTATCGGCCT TATCATGTTG GCGGGTATCG TGGTGAACAA CGCGATTGTG
CTTGTTGATC GCATCAACCA ACTGCGTAGT GAAGGTGTTG AAAAACTCGA TGCTATTCGC
GCCGCCGCTA AATCACGCCT ACGCCCCATT ATGATGACAA CGCTCACCAC CACCTTAGGC
TTATTGCCGA TGGCGCTGGG GTTAGGCGAT GGTTCAGAGG TGCGTGCACC TATGGCGATT
ACAGTGATCT TTGGTCTGAG TTTATCCACT TTACTGACCT TAATTGTGCT GCCAGTGCTC
TACGCCCTGT TCGACCGTAA AGTGTATGAC GTTGCAGCAA CAAATATCGC GCATGACGTT
GAGGAGGCTC GCCCATGA
|
|---|
| Protein sequence | MSIISTSVKR PVTVWMFMLA VILFGMVGFS RLAVKLLPDL SYPTLTIRTM YDGAAPVEVE
QLVSKPIEEA VGVVKGLRKI SSISRSGMSD VVLEFEWGTT MDMASLDVRE KLDTIALPLD
VKKPLLLRFN PNLDPIMRLA LSVPNASEAD LKQMRTYAEE ELKRRLEALS GVAAVRLSGG
LEQEVHIQLN QEKLSQLNLN ADDIKRRINE ENINLSAGKV IQGDREYLVR TLNQFNSLDE
LGQVIVYRDE QTLVRLFEVA TITDAFKERS DITRIGSQES IELAIYKEGD ANTVAVAKKL
RDELVKINQD PKQNKLEVIY DQSEFIESAV SEVTSSALMG SLLSMLVIYL FLRNIIPTLI
ISISIPFSVI ATFNMMYFAD ISLNIMSLGG IALAIGLLVD NAIVVLENID RCRSEGMSKL
DAAVTGTKEV AGAIFASTLT TLAVFVPLVF VDGIAGALFS DQALTVTFAL LASLLVALTS
IPMLASREGF KTLPALIKTT PKDKPTTKMG KLKHYSATVF SFPILLIFSY LPSALLTLVL
ILGRFFSWLI GLIMRPLSSG FNFIYHSIEK VYHKLLASAL RQQMTTLLLT IAITGACISL
LPRLGMELIP PMNQGEFYVE ILLPPGTAVS ETDKVLQQLA LSIKDRPEVK HAYSQAGSGG
LMTSDTARGG ENWGRLQVVL TDHSAYNAIT QVLRDTARRI PELEAKIEQP ELFSFKTPLE
IELTGYDLNL LKRSADSLVK ALSASDRFAD VNTSLRDGQP ELSIRFDHAR LAALGMDAPT
VANRIAQRVG GTIASQYTVR DRKIDILVRS ELAERDQISD IDALIINPNS NQPIALSAVA
EVSLQLGPSA INRISQQRVA LVSANLAYGD LSDAVAQAQQ ILSQQVLPAS VQARFGGQNE
EMEHSFQSLK IALILAIFLV YLVMASQFES LLHPLLILFA VPMALAGSVL GLYITQTHLS
VVVFIGLIML AGIVVNNAIV LVDRINQLRS EGVEKLDAIR AAAKSRLRPI MMTTLTTTLG
LLPMALGLGD GSEVRAPMAI TVIFGLSLST LLTLIVLPVL YALFDRKVYD VAATNIAHDV
EEARP
|
|---|
| |