| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2510 |
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| Symbol | sdhA |
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| ID | 5371293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 2997905 |
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| End bp | 2999671 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640830723 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001366710 |
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| Protein GI | 153001029 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000247676 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTACGCGA ATTTGATGCT GTAGTGATCG GTGCCGGTGG CGCTGGTATG
CGTGCAGCGC TGCAGATTTC CAAAGAAGGT AAAAGCTGTG CGCTTTTATC AAAAGTATTT
CCAACTCGTT CTCATACCGT ATCTGCGCAG GGTGGTATCA CTGTTGCGTT AGGTAACGCC
CATGAAGATC ATTGGGAACA GCACATGTAC GATACCGTGA AAGGTTCCGA TTTTATCGGT
GACCAAGAAG CGATTGAATT CATGTGTAAA ACCGGTCCTG AAGCCGTTAT TGAACTTGAG
CAAATGGGTT TGCCTTTTTC TCGTTTCGAA AATGGCACGA TTTACCAACG TCCGTTTGGT
GGTCAATCTA AGAACTTTGG TGGCGAGCAG GCTGCACGTA CTGCGGCAGC TGCCGACCGT
ACTGGTCATG CTTTGCTGCA CTGTTTATAC CAACAAAACG TGAAGCATAA GACGCAAGTC
TTCTCAGAAT GGTATGCATT AGATCTCGTT AAAAACGATG ATGGCGCTGT TGTGGGTTGT
ACTGCGATTG AAATTGAAAC AGGCGATATC GTTTATTTCA AAGCCAAAGC AACGATTCTA
GCGACCGGTG GTGCAGGGCG TATTTACGCT TCTACTACTA ACGCGCATAT CAACACCGGT
GACGGTGTCG GTATGGCAAT GCGTGCTGGC GTGCAAATGC AAGACATGGA AATGTGGCAA
TTCCACCCAA CTGGCATCGC CGGCGCGGGT GTACTTGTGA CTGAAGGTTG TCGTGGTGAA
GGCGGTTATC TGCTGAACAA AGACGGCGAG CGCTTCATGG AGCGTTATGC CCCTAACGCG
AAAGATTTGG CATCACGCGA CGTGGTAGCA CGTTCTATGA TGACTGAAAT CCGCGAAGGT
CGTGGTTTAG ACGGTCCATT AGGTCCACAC TGTTTACTCA AGCTTGATCA CTTAGGTAAA
GAAACATTAG AAGCACGTTT ACCAGGCGTG TGTGAATTGT CTCGTACCTT TGCCCATATC
GATCCGGCCG ATGGTCCAAT CCCAGTATTA CCAACCTGTC ACTACATGAT GGGCGGTCTG
CCAACTAAGG TCAGTGGTCA AGTTATTCGT AAGAATGAAG ACGGCACTGA ACAAGATGTT
ATCGGTCTGT TCGCTGTGGG TGAGATTGCC TGTGTATCTG TTCACGGTGC AAACCGCTTA
GGTGGTAACT CATTGCTCGA CTTAGTGGTC TTTGGCCGCG CAGCGGGTCA GCATTTAGGT
AAAGCTTTGG ATGAGACTGA CGATCCAAAA GACGCAAGCG ATGCGGATAT TCAAGCATCT
CTGGCCCGTC TGAATCGTTG GGAAAGCAAC AAAGATGGCG AAGACCCAGC GCAAATCCGT
AAGGATCTGC AACTGTGTAT GCAATTAAAC TTCTCTGTAT TCCGTCGTGG CGATGCTATG
GCTGAAGGTT TAGAGCAGTT GAAAGTGATC CGCGAACGTC TTGAAAATGC TAAATTGTCT
GATAACTCTC GTGAATTCAA CACTCAACGT ATTGAATGCT TAGAGTTAGA TAACTTAATG
GCAACGGCGA TTGCAACGGC TTATGCGGCT AACTTCCGTA CTGAAAGCCG CGGTGCTCAC
TCACGTGAAG ATTATTTAGA GCGTGATGAT GAGAACTGGT TATGCCACAG CTTATTTGAC
CCTGTGACTG AAACGATGGA CCGTCGTGCA GTGAACATGG CACCTAAGTT ACGTGAAGCA
TTCCCGCCGA AGAAACGTAC CTACTAG
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| Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQEAIEFMCK TGPEAVIELE QMGLPFSRFE NGTIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNDDGAVVGC
TAIEIETGDI VYFKAKATIL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PTKVSGQVIR KNEDGTEQDV IGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETDDPK DASDADIQAS LARLNRWESN KDGEDPAQIR KDLQLCMQLN FSVFRRGDAM
AEGLEQLKVI RERLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH
SREDYLERDD ENWLCHSLFD PVTETMDRRA VNMAPKLREA FPPKKRTY
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