| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2485 |
|---|
| Symbol | |
|---|
| ID | 5369878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2967091 |
|---|
| End bp | 2967555 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640830698 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001366685 |
|---|
| Protein GI | 153001004 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1607] Acyl-CoA hydrolase |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.138118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCTTA CGCCCATTTC TCCAAACACC GAAAATACCT CACGAACCGA AACCCCAGAA
GCACAATTTC CTGAAGCGAT TCAAACGCGA ATCGACTCCT CTGAAGCGCG GGTAATCAAA
GCGGTATTTC CATCCATCAC CAACCATCAC AATACGTTAT TTGGTGGCGA AGCTTTAGCG
TGGATGGATG AAACGGCCTT TATTGCTGCA ACTCGTTTTT GCCGTAAAAC CTTAGTGACT
GTGAGTTCCG ATAGAATCGA TTTTAAAAAA CCTATCCCCG CAGGCACATT AGCCGAACTG
ATCGCGCGGG TGATCCATGT CGGTAACACT TCATTGAAAG TTGAAGTGAA CATCTATGTC
GAAGACATGT ATCAAGATCA CCGAGAGCAT GCCATACGTG GTGTGTTCAC CTTTGTTGCG
GTTGACGAAC AACGAAATCC CACTCAAGTG TGGACATACG AGTAG
|
|---|
| Protein sequence | MSLTPISPNT ENTSRTETPE AQFPEAIQTR IDSSEARVIK AVFPSITNHH NTLFGGEALA
WMDETAFIAA TRFCRKTLVT VSSDRIDFKK PIPAGTLAEL IARVIHVGNT SLKVEVNIYV
EDMYQDHREH AIRGVFTFVA VDEQRNPTQV WTYE
|
|---|
| |