Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_2469 |
Symbol | |
ID | 5371955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 2945611 |
End bp | 2946459 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640830682 |
Product | pseudouridine synthase |
Protein accession | YP_001366669 |
Protein GI | 153000988 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000626747 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACAT TAACGACTCA ATCAAGTCAG GTAAGCGTGT CTCAACCTCC TGTTAGCAAA AGTATGAACA AAAACAAGTT TCCACCTAAA CGTGCCAATT CCAGCGCCAA TTCCCCAGCC AAGAGCACGA TTAAACCCGC TAAGCCCGCG AGCAGAGGCC CTGCCAACCG CGCTACCGCC GTAGATAGCA AAGTGGCGCC AGCACGTAAT GCCAATGGCA GTTTAAAGAA AGAACCCTTT AAAAATCCTA ATCGACGCGC AATTGCAGCG GCAAAACCGG TGCAGAGCCA AACGCTCGCA CCGATTATCG TGCTGTTTAA TAAGCCTTTT GATGTACTTT GCCAGTTTAC CGATGAACAA GGTCGTAAAA CCCTAAAAGA CTATATCCCC ATTGCTGACG TGTATGCCGC AGGCCGCTTA GACAGAGACA GTGAGGGCCT GTTACTGCTG ACCAATGACG GTCAATTACA GGCAAGACTG ACAGAACCGA AAAAGAAAAC CTTTAAGACC TATTGGGTGC AAGTAGAAGG CGTGCCGACG GAAGATGCAC TGACGAAACT GCGCCAAGGT GTTGAATTAA ATGATGGTAT GACGCTGCCT GCTAAAGTCA AAATCATGGA TTCACCCGAT ATTTGGCCAC GTAATCCACC GGTGAGAGAA CGCAAAAATA TCCCAACAAC TTGGCTAGAA ATCCAAATTC ATGAAGGTCG TAACCGCCAA GTCAGACGCA TGACAGCGCA TATCGGTTTT CCGACCTTAA GATTAATCCG TTATAAAATA GGCCAATGGA GTCTAGATAA TTTGCCATCG GGCGAGCATA AATGTATCCG TCTCGGTGAT GAAGTCTAA
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Protein sequence | MTTLTTQSSQ VSVSQPPVSK SMNKNKFPPK RANSSANSPA KSTIKPAKPA SRGPANRATA VDSKVAPARN ANGSLKKEPF KNPNRRAIAA AKPVQSQTLA PIIVLFNKPF DVLCQFTDEQ GRKTLKDYIP IADVYAAGRL DRDSEGLLLL TNDGQLQARL TEPKKKTFKT YWVQVEGVPT EDALTKLRQG VELNDGMTLP AKVKIMDSPD IWPRNPPVRE RKNIPTTWLE IQIHEGRNRQ VRRMTAHIGF PTLRLIRYKI GQWSLDNLPS GEHKCIRLGD EV
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