| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2448 |
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| Symbol | yebU |
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| ID | 5370969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 2923981 |
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| End bp | 2925498 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640830661 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001366648 |
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| Protein GI | 153000967 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATACT CGCGCCAGTT GATACACAGT CTATTTTCCT ATGGTTCAAT GAAATCAATG
GTTCAATTAA ATCAAAATTT TATCGATACA ATCACCCAAG AACTCCCCGC CCATTTATCC
ATGGACGAGT TTATTGCCGC CTGCGACAGG CCGCTTAGAC GTTCAATTCG GGTCAATACC
TTAAAAATCA GCAGCGACGA CTTTAAGACT CTGATGCAAC CTAAGGGCTG GACGTTTGAT
CCTATTCCTT GGTGTGAAGA CGGATTTTGG ATCAGCTACG ATGAAGAAGA ACAACTCGGC
AATGCCTTAG AGCACATTCA GGGCTTATTC TACATTCAAG AAGCCAGCTC TATGTTGCCG
CCAACCGCAC TTTTTACGCC TAGTGCATTT ACGACTAGTG CAAAGTGGCA GTACGTACTC
GATCTCGCCT CTGCGCCGGG TTCAAAAACC ACGCAAATGG CCGCATTGAT GCAAAACCAA
GGTTTATTGG TGGCGAATGA GTATTCGGCG AGCCGCGTGA AAGTATTGCA CGCCAATGTG
CTGCGCATGG GCGCAAGTCA CTGCGCTCTC ACCCATTTCG ATGGCCGTGT GTTTGGCGAA
TACCTATACG AAAGTTTCGA TGCAGTGCTC ATTGATGCGC CCTGTGGCGG CGAAGGCACA
GTGCGTAAAG ACGCCGATGC GTTAAAACAT TGGAGCCTTG ACGATGTGTT GGCGATTAGC
GAAACCCAAA AAGCCTTAAT CGAATCGGCG TTTCTCGCCC TGAAACCCGG CGGCAGTTTA
GTTTACTCAA CCTGCACCTT AAACCGCCTC GAAAACCAAG GTGTGTGCGA GTATTTAAAG
CAAGTCTACG GCGATGCCGT GCAATTTGAA TCCTTAAGCG ATTTATTTGA TGGCGCTGAG
CGAGCCACGA CTGCCGAAGG CTTCTTGCAT GTCTGGCCGC AGATTTACGA CAGTGAAGGT
TTCTTTGTCG CTAAATTGAC AAAAACTGCC TCTGTGCCGC GGTTACAGCC TGAGCCTAAA
CTGCAGAAAA ACTTCCCCTT CACGACCGCA TCAGCGAAAC AAGCCCAAGG GATCAAAGAC
TATTTTCAGC AGGATTTAGG CATCAGCTTA CCAGACGAAC TCATCATGGT TCGCGATGAT
GAATTCTGGC TATTTCCACA TGAATTCAAC GCTTTTATCG GCCGTATGCG CTTTCAGCGT
ATTGGCATTA AACTCGCCGA TAACAGTAAG CACGGTTTTA AAGTCCGCCA TGAAGCGATT
ATTGCTTTAG CGGGAAAACA ACTTAGCCCA ACGGCAAAAA CGGTCGATGT GAGCGATGTT
GAAGCCAAAG AGTATTTGAT GGGGCGAGAT ATTCCCTTAG CGACCGCAGG CAAAGCCCAA
GGTGAAGTGA TCGTCTGTTA TGGCGGCGCG CCGTTAGGCA TGGCGAAACA TTTAGGTAAT
AAGTTAAAAA ACAATCTGCC CAGAGACTTA GTGAAAGATA AAGTGTTATT GCTACCAGAA
CAGACAAAAT CGTTATAG
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| Protein sequence | MIYSRQLIHS LFSYGSMKSM VQLNQNFIDT ITQELPAHLS MDEFIAACDR PLRRSIRVNT
LKISSDDFKT LMQPKGWTFD PIPWCEDGFW ISYDEEEQLG NALEHIQGLF YIQEASSMLP
PTALFTPSAF TTSAKWQYVL DLASAPGSKT TQMAALMQNQ GLLVANEYSA SRVKVLHANV
LRMGASHCAL THFDGRVFGE YLYESFDAVL IDAPCGGEGT VRKDADALKH WSLDDVLAIS
ETQKALIESA FLALKPGGSL VYSTCTLNRL ENQGVCEYLK QVYGDAVQFE SLSDLFDGAE
RATTAEGFLH VWPQIYDSEG FFVAKLTKTA SVPRLQPEPK LQKNFPFTTA SAKQAQGIKD
YFQQDLGISL PDELIMVRDD EFWLFPHEFN AFIGRMRFQR IGIKLADNSK HGFKVRHEAI
IALAGKQLSP TAKTVDVSDV EAKEYLMGRD IPLATAGKAQ GEVIVCYGGA PLGMAKHLGN
KLKNNLPRDL VKDKVLLLPE QTKSL
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