| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2373 |
|---|
| Symbol | |
|---|
| ID | 5371340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2831095 |
|---|
| End bp | 2832318 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640830587 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_001366574 |
|---|
| Protein GI | 153000893 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.409175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACCCAC AATCACAACC TTCTGCCCAT AACGGCAGAC GTATACCGAA TTTAGCGCTG
CTTATTCCCA TGCTTGCGGC GATTGTCGCG ATCACGCCAT TGGCCATCGA CATGTACTTA
CCTGCGATGT CGACATTGGC CCTCAGTTTT CATACCGATG TCACGACAGT GCAACAGTCC
CTGAGTATCT ACTTAGCGGG TTACGCACTG GGCATGTTAT GTTTCGGCCC CCTAGCCGAC
CGCATTGGTC GTCGACCTAT GGTGATATTG GGACTGAGTG GATTTATGCT CACCAGCTTA
CTGATTGGGT TTGCGGGTCA AGTCGAAGTC TTTCTTGGCC TACGTTTTTT ACAGGCCTTT
ATCGGCGCGG CTGCGACTGT GGTGGTGCCG GGATACATCA AAGAAGTCTA TGGTGACAAT
ACCGCCAAGG GTATGTCATA CGTGAGTTTA ATCATGATGT TAGCGCCATT GTTGGCTCCT
AGTATTGGCA GCTTGATCCT CGAACTCGGT GATTGGCATT TAATCTTCTT CATTCAATCC
GCCTATGCCG CTACCCTGTT ATTACTGGTG CTGTTTGCGC TGAAAATGCC CAGCGATAAA
GATATGGATA CCCGCAGCCA AAAATCGTTT CTTGGCGCCT ATGCGACCGT ATTTTCCCGC
CCTGGCGTTA AGCTAAACAT TGCCAGCGGC GTGTTAACGT CTTTTTCATT TTTCTGTTAT
CTCACCGCAT CGCCCTTCGT TTACATGGAA GTCTTTGCCT TAGATAAATC CTATTTTGCC
ATCTTGTTTA GCACTAACGT CGGCGCTTTG ATGTTGGCCA ATATCATTAA TACGCGCATC
GTGGGCCGTT ATGGTTCGCT ACGTATGTTG CATGTGTCGA CCTTTTTCGG GGCGATTGCT
GGTGTCGGTT TATTAACCGT AAACCTGCTG GATATGAGCT ATCACTTTAC CGTGATCATG
CTTATTCCTT TGATGGGTAG CCTAGGGGTG ATGTCAGTCA ATGCCGATGC GATAGTACTG
ATGAAGTTCA AGCAAGAAAC GGGAACCGCA ACCGCAGTTA TTGGCACCTT AAGATTTGGC
TGTGGCGCAC TGGCGGGCCC GTTATTGGCG GTGTTTTACG ATGGCACAGC CGTGCCCTTC
TCTGCACTCA TGTTAGGCTC TGTTGTGTTA GTCGGTATTT GCCAATTCAA TCGTCCTAAG
CATCAAATCC AACCGACGGT TTAA
|
|---|
| Protein sequence | MDPQSQPSAH NGRRIPNLAL LIPMLAAIVA ITPLAIDMYL PAMSTLALSF HTDVTTVQQS
LSIYLAGYAL GMLCFGPLAD RIGRRPMVIL GLSGFMLTSL LIGFAGQVEV FLGLRFLQAF
IGAAATVVVP GYIKEVYGDN TAKGMSYVSL IMMLAPLLAP SIGSLILELG DWHLIFFIQS
AYAATLLLLV LFALKMPSDK DMDTRSQKSF LGAYATVFSR PGVKLNIASG VLTSFSFFCY
LTASPFVYME VFALDKSYFA ILFSTNVGAL MLANIINTRI VGRYGSLRML HVSTFFGAIA
GVGLLTVNLL DMSYHFTVIM LIPLMGSLGV MSVNADAIVL MKFKQETGTA TAVIGTLRFG
CGALAGPLLA VFYDGTAVPF SALMLGSVVL VGICQFNRPK HQIQPTV
|
|---|
| |