Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_2267 |
Symbol | emrD |
ID | 5370978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 2702862 |
End bp | 2704094 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640830481 |
Product | multidrug resistance protein D |
Protein accession | YP_001366468 |
Protein GI | 153000787 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0513916 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGGCA CGCCACACTC TCCTATTCAT CACGATGTCG CTCCAGCGGC GAGTCAGTCT AGTTTACTGT TAATGATTGT CTTTATGGTC GCCTGTGGCC AAATGGCGCA AACGATTTTT GTGCCTGCCC TTCCGCAAAT TGCACTCGGG CTCCATGTGG ACGCCAGTCA GCTACAAGCA GTGATGGCCT GTTACTTACT CTCCTATGGG ATGTTTCAAT TTGTGTATGG CCCAGTGTCA GATCGCGTTG GTCGTAAAAT GCCACTCGTC GTGGGTATCG CAATTTTTAT TATAGGTGCA GTGTTTGCGG CTCAGGCCAC AAGCTTTAAC CAACTGATTA TGGCGAGCCT TATCCAAGGA TTAGGCACAG CCAGCGCGGG CGCATTATGC CGGAGCATTC CCCGCGATCA TTACTTTGGC GACCGACTGG TTAAATTTAA TAGCTATGTC TCGATGGCCG TGGTGTTTTT ACCTTTACTG GCACCATTTA TCGGCAGCGC CAGTGCGGCC TACTTCGGCT GGCAAGCCGT ATACTGGGTG TTAGCAGGAT TCGGTGCCGT GGTCTGGCTG TTATTGATAT TCGCCTTTAA AGAGTCATTA CCTAAGGCGC AGCGGGAACA TCAAGCCATT ATCGCATCCT ATCGGCATGT CCTGCGCCAT AGAGCGTTTC GAGCTTACTT GTTTTCTTTG ATCGCGACCT TTGCGGGTAT TGCGGCGTTT GAAGCCATTG CCGGCGTTCT CTATGGCCAA TATCTTGGAC TGACGCCTTT CATGGTCAGT TGTTATTTTG TGGCGCCTAT TCCTGGCTAT TTACTGGGCG CGCTGATCGC AGGTCGACAA AATAAGCCGC AAAGAGTTAT CTATCAAGGT GTTGCGCTGC TTGGCGCTGG CGCCTTATTC ATGTTGATCC CGGGGCTTTT CAATTTAGTC GTCGGTTGGA GTTTACTGGT TGGATCGATT TTATTCTTCA GTGGCGCCGG CATGCTGTTC CCTACCCTGA CCTCGGCGGC TTTAGAGCCA TTTCCACGTC AAGCAGGGAT TGCGGGAGCA TTACTGGGAG GATTACAAAA TTTTGGTGCC GGACTTGCCG CATTGACTAT GTCTTTAGTG CCTATGGGCG GCCAGTTGAG CATAGGTTTA TTAAGCGCTG TCATGGTGGT GTTAGTGATT TTGTCTTTGT ATTACGCCAG AGATCAAAAT GACACTCACC ACAATTTGAT GCCACAGATT TAA
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Protein sequence | MSGTPHSPIH HDVAPAASQS SLLLMIVFMV ACGQMAQTIF VPALPQIALG LHVDASQLQA VMACYLLSYG MFQFVYGPVS DRVGRKMPLV VGIAIFIIGA VFAAQATSFN QLIMASLIQG LGTASAGALC RSIPRDHYFG DRLVKFNSYV SMAVVFLPLL APFIGSASAA YFGWQAVYWV LAGFGAVVWL LLIFAFKESL PKAQREHQAI IASYRHVLRH RAFRAYLFSL IATFAGIAAF EAIAGVLYGQ YLGLTPFMVS CYFVAPIPGY LLGALIAGRQ NKPQRVIYQG VALLGAGALF MLIPGLFNLV VGWSLLVGSI LFFSGAGMLF PTLTSAALEP FPRQAGIAGA LLGGLQNFGA GLAALTMSLV PMGGQLSIGL LSAVMVVLVI LSLYYARDQN DTHHNLMPQI
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