Gene Shew185_2267 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_2267 
SymbolemrD 
ID5370978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp2702862 
End bp2704094 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content50% 
IMG OID640830481 
Productmultidrug resistance protein D 
Protein accessionYP_001366468 
Protein GI153000787 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0513916 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGGCA CGCCACACTC TCCTATTCAT CACGATGTCG CTCCAGCGGC GAGTCAGTCT 
AGTTTACTGT TAATGATTGT CTTTATGGTC GCCTGTGGCC AAATGGCGCA AACGATTTTT
GTGCCTGCCC TTCCGCAAAT TGCACTCGGG CTCCATGTGG ACGCCAGTCA GCTACAAGCA
GTGATGGCCT GTTACTTACT CTCCTATGGG ATGTTTCAAT TTGTGTATGG CCCAGTGTCA
GATCGCGTTG GTCGTAAAAT GCCACTCGTC GTGGGTATCG CAATTTTTAT TATAGGTGCA
GTGTTTGCGG CTCAGGCCAC AAGCTTTAAC CAACTGATTA TGGCGAGCCT TATCCAAGGA
TTAGGCACAG CCAGCGCGGG CGCATTATGC CGGAGCATTC CCCGCGATCA TTACTTTGGC
GACCGACTGG TTAAATTTAA TAGCTATGTC TCGATGGCCG TGGTGTTTTT ACCTTTACTG
GCACCATTTA TCGGCAGCGC CAGTGCGGCC TACTTCGGCT GGCAAGCCGT ATACTGGGTG
TTAGCAGGAT TCGGTGCCGT GGTCTGGCTG TTATTGATAT TCGCCTTTAA AGAGTCATTA
CCTAAGGCGC AGCGGGAACA TCAAGCCATT ATCGCATCCT ATCGGCATGT CCTGCGCCAT
AGAGCGTTTC GAGCTTACTT GTTTTCTTTG ATCGCGACCT TTGCGGGTAT TGCGGCGTTT
GAAGCCATTG CCGGCGTTCT CTATGGCCAA TATCTTGGAC TGACGCCTTT CATGGTCAGT
TGTTATTTTG TGGCGCCTAT TCCTGGCTAT TTACTGGGCG CGCTGATCGC AGGTCGACAA
AATAAGCCGC AAAGAGTTAT CTATCAAGGT GTTGCGCTGC TTGGCGCTGG CGCCTTATTC
ATGTTGATCC CGGGGCTTTT CAATTTAGTC GTCGGTTGGA GTTTACTGGT TGGATCGATT
TTATTCTTCA GTGGCGCCGG CATGCTGTTC CCTACCCTGA CCTCGGCGGC TTTAGAGCCA
TTTCCACGTC AAGCAGGGAT TGCGGGAGCA TTACTGGGAG GATTACAAAA TTTTGGTGCC
GGACTTGCCG CATTGACTAT GTCTTTAGTG CCTATGGGCG GCCAGTTGAG CATAGGTTTA
TTAAGCGCTG TCATGGTGGT GTTAGTGATT TTGTCTTTGT ATTACGCCAG AGATCAAAAT
GACACTCACC ACAATTTGAT GCCACAGATT TAA
 
Protein sequence
MSGTPHSPIH HDVAPAASQS SLLLMIVFMV ACGQMAQTIF VPALPQIALG LHVDASQLQA 
VMACYLLSYG MFQFVYGPVS DRVGRKMPLV VGIAIFIIGA VFAAQATSFN QLIMASLIQG
LGTASAGALC RSIPRDHYFG DRLVKFNSYV SMAVVFLPLL APFIGSASAA YFGWQAVYWV
LAGFGAVVWL LLIFAFKESL PKAQREHQAI IASYRHVLRH RAFRAYLFSL IATFAGIAAF
EAIAGVLYGQ YLGLTPFMVS CYFVAPIPGY LLGALIAGRQ NKPQRVIYQG VALLGAGALF
MLIPGLFNLV VGWSLLVGSI LFFSGAGMLF PTLTSAALEP FPRQAGIAGA LLGGLQNFGA
GLAALTMSLV PMGGQLSIGL LSAVMVVLVI LSLYYARDQN DTHHNLMPQI