| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2229 |
|---|
| Symbol | |
|---|
| ID | 5373724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2653957 |
|---|
| End bp | 2654994 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640830444 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001366431 |
|---|
| Protein GI | 153000750 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.186018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA AACCCCTTGA ATTGGTTTAC CCATTTTTAA CGGAAGCTTT GCGGCTGAGC
GAGAATGGTC TAGCGGTGTT AGACAAGCAT AATTATTTTA TCTTTTATAA TAATACCTTT
GCGAAAATGT TTGGTTTTGT TGATCAAGAC ATGGTCGGAA AGCATTTTGA CGACATGATG
CGCTTTGCCT TTACCCATAA ACAAGGACCG AAAATTGAGC ATGAAACCAT AGAGGAATGG
CTCGAGCTTA TTCATGCTAA TCAACGTAAA TCGGCTTTTA GACGTTTTGA AGTGGATCTG
GTCGACGGTA GCTGGTTGCA ACTCTCGGAG CAGGTTTATC ACAATGGCGA TATGGTCATT
GTTTGTACTG ATATCACCCA TTTAAAACAG GTCGAGTTTG CCCTCAGGAA TGCGCAAACG
GAGTTGAATC GCCTCGCGCT CACCGATGAG TTAACGGGGA TTGCCAATCG GCGGCACTTT
TTTCAGCAGT TAGAGCACGA AATCAAACGC TTGAGTCGCT TACAGTTGCC ATTATGCCTA
GTGATGATGG ATATCGATAA TTTTAAACTC GTCAATGATC GCTATGGCCA TCAAGTCGGT
GACAAGATAT TGCAGCATTT TACCCAATTC ATCAGCGCCC GAACCCGTCC CTACGATATT
TTTGGCCGCT TAGGCGGTGA AGAGTTTGCT CTGTTACTGC CAGAGACCAC AGTTGATGCG
GCCCAGAAAA TCGTGACGCG GATGATGTCA TCCCTTGCCA ATGAAGACAT TTCTGCAATC
GTGGCTGATT TTCAATATCA ATTTTCAGCA GGCGTCAGCG CATTAACCCC TGTTATTATT
CACCATGGAA TCGATAACAG TGCTGATATA GCAGATGTGG AGCAGGTTGC ATTGCCTGTC
GAAACAGGAA GTCAGTGCCG CTCGGATGCT GAAAAGCTGG TGGCCGAGGC GGATAAAGCG
CTCTATCAAG CTAAAACCCT AGGGCGAAAT CGCGTGGTGA TATGGGATGA TGTGATGTTA
ACGGGGGAAC AAGCCTAG
|
|---|
| Protein sequence | MDKKPLELVY PFLTEALRLS ENGLAVLDKH NYFIFYNNTF AKMFGFVDQD MVGKHFDDMM
RFAFTHKQGP KIEHETIEEW LELIHANQRK SAFRRFEVDL VDGSWLQLSE QVYHNGDMVI
VCTDITHLKQ VEFALRNAQT ELNRLALTDE LTGIANRRHF FQQLEHEIKR LSRLQLPLCL
VMMDIDNFKL VNDRYGHQVG DKILQHFTQF ISARTRPYDI FGRLGGEEFA LLLPETTVDA
AQKIVTRMMS SLANEDISAI VADFQYQFSA GVSALTPVII HHGIDNSADI ADVEQVALPV
ETGSQCRSDA EKLVAEADKA LYQAKTLGRN RVVIWDDVML TGEQA
|
|---|
| |