| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2174 |
|---|
| Symbol | |
|---|
| ID | 5372601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2590228 |
|---|
| End bp | 2591523 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640830389 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001366379 |
|---|
| Protein GI | 153000698 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.193814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTTC CTCCCGTAAT CCCGTTATTT GACTCATTTG AATTCATACA AGTTGGCAAT
AGTATCGTTA ACCAATATAT TACCCAAATT AGCATGAAAA AGGTGGCCGA TGCGGGTTTA
GTGATTGAGC ACGCTAGTGA TTGGCTGTTT GAGCAAAAGC ATAACGAAAA CAACTATAAA
GCCTATCGCA GCGAGCTCAC GACATTTCTT CATTGGTGTT TTGATGTGGT TTCAATGTCG
CCCATAGAAG TCACACGCAA AGATATGAGC CATTACGTAG ATTACTGCCA GGCGCCGCCC
ATAGCACTGA TTGGCTATTT TAATGTGCCA CAATTCAAGC TCGATAAAAT GCGTGATGAA
CGGGTTCCAA ACCCACAGTG GCGGCCATTT GTCGGTAAAA AGCGACTCGG GCAAATCCAG
CCTTATGCGT TAAGTGACAA TGCGTTAAAA ACGAAAATGG CCATTTTGTC TTCGTTTTAC
TCGTACCTGA CAAGTGAAGA ATATTGTGAG CGTAATCCGG CACAAATTTG GCTGAATCAC
AGTCGATTCG CGGCCAATCG GCAATATCAG CGTCAACATC ATGAAGATGA TAACAGTCTC
GCATTCACTG AATTACAGTG GTCATACATT ATGGCGACCG TAACAGCGTT GGCAGAAACA
TCGCCCGAAT TACATCAAAG AAGCTTATTT CTGATTTCAT TGATCTATTG TTGCTATTTA
CGTATCTCAG ATGTGTCTGC ACGCGCAGGT TATTCACCGG TGATGGATCA GTTTAAGCAC
AATCAACAAA CGGGAATTTG GAGTTTTCAT ATTCCATTGA GCAAGGGCGG TAAAAGGCGC
AGCGTGGCAA TCTCAAAAGC TTTACTCGAC GCCTTAGTCA AATACCGCCA GTTTTTAGGA
TTAACAGATT ATCCAGCGCC AAACGAGAAC CATCCTTTGT TTGTACGGCA CAAAGCCGCT
GGCCGCGGTC GAGATGTTGG TATCCTCAAT GCCAATCTTG GCATTCGTCA TGTTCGTGAT
GAAATTCAAA GTATTATCAA CCTAGCAGCA GAAAGTATTG AAGCCGATGG CTTTGCACAA
GACGGTGCGC AAATGCGTAA ACTCACGGCC CATAATATTC GCCACACAGG CATTACACAC
GATATCAATA TCAACCGCAG ACCGTTATCC CATGTACAAG CCGACGCTGG CCATGAGAGC
ATTGACACCA CGTCACAGTA TTTGCACACA AGCCAAATAG AACGCCATGA AAGTGCATAC
AATAAACCAA TCGACCATTT AAAAGGCATA GAGTAA
|
|---|
| Protein sequence | MQLPPVIPLF DSFEFIQVGN SIVNQYITQI SMKKVADAGL VIEHASDWLF EQKHNENNYK
AYRSELTTFL HWCFDVVSMS PIEVTRKDMS HYVDYCQAPP IALIGYFNVP QFKLDKMRDE
RVPNPQWRPF VGKKRLGQIQ PYALSDNALK TKMAILSSFY SYLTSEEYCE RNPAQIWLNH
SRFAANRQYQ RQHHEDDNSL AFTELQWSYI MATVTALAET SPELHQRSLF LISLIYCCYL
RISDVSARAG YSPVMDQFKH NQQTGIWSFH IPLSKGGKRR SVAISKALLD ALVKYRQFLG
LTDYPAPNEN HPLFVRHKAA GRGRDVGILN ANLGIRHVRD EIQSIINLAA ESIEADGFAQ
DGAQMRKLTA HNIRHTGITH DININRRPLS HVQADAGHES IDTTSQYLHT SQIERHESAY
NKPIDHLKGI E
|
|---|
| |