| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2044 |
|---|
| Symbol | |
|---|
| ID | 5371135 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2446035 |
|---|
| End bp | 2447012 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640830248 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001366249 |
|---|
| Protein GI | 153000568 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.82426 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTAA AGGAACAGTA TTCTATTCCT CGTATCCCAG CGATACTTTT TATGCTTGCC
GCAATACTGA CACTGTGTAC CTTCGTTATT TACCGTTACA TCCACCAAGA CTACATCCTT
ACTTTTGTCT TTGGCATCGC CTTATTACCC TTATGCATTA CATTAATCTT AGAGATAAGG
CGTAAATCGA ATTTATTCCA GAAGCAACTG ACGCTACTCA TAATCTGTGG GGCCATCATT
TTTAGCTGTT ATGAAATAGG CTATAAAGGA TTAATTTATA TTTCCCCAAC AGTATTTATC
TTCTTTTTCC TTTTCAATCT AAAATCAAGC CTAATATTGA GCACGCTCTA TGCCTGTATC
AGTTTAGTGA GTGCATTACA GGTAGAGTCA GTCGAGTTAG TTCTGAGGTT CTCAGTCGCC
ACCTTTGATT GCATTATCTT TGCCGCTATT TTTGCGCATA TCATTAATAA ACAGAGACAA
GCTCTAGTCC ATTTAGCCAA TACGGATGAG CTCACAGGAG CACTCAACCG CAAACAACTC
AAAACTAAGC TTGAACTGAG CGTCTATGAG TATCAGCAAC AGCAAATCCC TGCTAGTTTA
CTCTTGATCG ATATCGATTT TTTCAAAATG GTGAACGATA ATTTTGGTCA TATCATGGGC
GACCAATTAC TCAATAAATT CAGTCAACAC ATCCAAAAAA AGATCAGAAA AGACGACTTA
TTATTCCGTT TCGGCGGAGA AGAATTTCTG ATCTTGCTAC CCAATACTCA ATTTGAGTCG
GCTGCCATTG TCGCCGAAGA CCTTAGACGA AGTATTGAAG AACAACACTT TCTCGACCAA
CACACCCAAG TCACTTGCAG TATTGGAGTT GCTGATTTAC GTCAAGCTGA CACCTTAGAC
ACTTGGCTTA AAACCTGCGA TAACCTGCTG TATAACGCTA AAAATGCAGG ACGCAATTGT
GTTGTCGCTC GCGCGTAA
|
|---|
| Protein sequence | MELKEQYSIP RIPAILFMLA AILTLCTFVI YRYIHQDYIL TFVFGIALLP LCITLILEIR
RKSNLFQKQL TLLIICGAII FSCYEIGYKG LIYISPTVFI FFFLFNLKSS LILSTLYACI
SLVSALQVES VELVLRFSVA TFDCIIFAAI FAHIINKQRQ ALVHLANTDE LTGALNRKQL
KTKLELSVYE YQQQQIPASL LLIDIDFFKM VNDNFGHIMG DQLLNKFSQH IQKKIRKDDL
LFRFGGEEFL ILLPNTQFES AAIVAEDLRR SIEEQHFLDQ HTQVTCSIGV ADLRQADTLD
TWLKTCDNLL YNAKNAGRNC VVARA
|
|---|
| |