| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2042 |
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| Symbol | |
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| ID | 5373780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 2442286 |
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| End bp | 2444535 |
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| Gene Length | 2250 bp |
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| Protein Length | 749 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640830246 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001366247 |
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| Protein GI | 153000566 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTACG GCGTTAATCT TCCAGATCTG CTCGACCATG CTGACGTTAA ACTCGCCCAC
AATGTCAGCA TAGCTTGCTA TAGCAGTGTT CTCTCTATGC TGCTTAATGG CGCACCGCTA
CATGAAATCT TGCACGCCTT AGTGCTAAAA ATCGAAGCGC AAAAGATAGG CACTCGAGGC
TCTGTATTAC TGCTCAGCGG TGATGGCAAA CGTTTGTTGT TAGGTGCTGC GCCCCATTTA
CCCGACAGTT ACAACCAAGC GATTAATGGG GTCGAGATTG GCCCCAATGT TGGCTCCTGC
GGAACAGCGG CTTATTTCGC AAAGCGGGTT ATCGTTGAAG ACATCGCTAC ACATCCCTAT
TGGGAAAATT ATAAAGAACT GCCACTGCGT GCCGGTCTTA AATCTTGTTG GTCTGAACCT
ATCAAAGATA CTCAAGGCAA AGTGCTTGGC ACATTTGCCA TGTACTACGA TACGATAAAG
TCCCCAACAG AGCTTGATTT AGAGCTGATT TCAGAGGCGG CGAGATTAGC CAGTTTAGCC
ATTGAACGCA GTCGGGCAAT GGAGTTTCAG CGTTTAGCAG TGAAAATTTT TGACCGCTTA
CCTTTGGCAC TGGTTATCTC CAATTCCGAT GATTCCGTTC TCTATGCTAA CCCCGCTTTT
AAACACATCG TTCTTCCACA AGATATTGAT ATCGCAAACT TTAACCCAAA GATGTTTTTA
TCTGCGTCTC AACCCAATGA GTTAGTTGGC CTATTTGAGC ATTTAGCGCA GGATAAAATG
TGGCAGGGGG AATTGGTTGG CTTAAGGGGC AATGGCGAGG AGTTTTATCT AGACCTTATC
GTCACCACAT TTCTAGAGCC CAATGGATTA CAGCCGTGTT TTGCGTGGCT ATTTTCAGAT
ATTAGTGAGC GTAAAAAAGC GGCGCAGCTG ATTAAGTATC AGGCCAATAA TGACTCGCTG
ACTGGGCTTG CTAACCGTAA TGCCTTGTTT AAACTGATCC AATCTTTAAT TACCTCTGAC
AGTCTGACGC CCGGCTTTAG TTTTATGCTG ATGGATTTAG ATAACTTTAA ACAAGTTAAC
GACACCCATG GCCACGACAA AGGTGATGCG TTATTAGTGC AAGTGGTGCG GCAGATTTGC
GAGTGCCTCA ATGACACTAT GGTGTTTGCG CGCCTCGGCG GTGATGAGTT TGCCTTACTG
TTACCTGGGA TAGTCAACCA GAAAGAGTTG GCACAACTCG CTGAAACAAT TAATAAGCAT
GTTGCTAAAC GTTATGTGCT TGCCGATGGT AAAGGCGTTT ATAGTTCGGT AAGTATAGGG
ATTGCGCGTT TTCCTGAAGA TGCCCTCGAT CTCGAGCAGC TGTTAAATTG CGCCGATCAG
GCCATGTATA TTTCAAAGGC TAACGGTCGT AATCGTTATC ATTTTTTTAC TGAGCAAATG
CAGCTTAATG CCGAGCGCAT TGCCAGCCTT CATAATCAAC TCAAGCAGGC ACTCGATCAA
CAGACCTTCG AGCTTTATTA CCAGCCCATA GTGAATGCGA CCACAGGTTT GATTGTTCGC
GCCGAAGTGC TGCTGCGCTG GCAGCATGAA GGGCAATTCA TTCCCCCCGA TGAGTTTATT
CCCATCGCGG AGAACAGCGG CTTAATTGTT GATATTGGTC GAGATGTGCG CCTTGGCGCT
ATGCAAACCA TCTTAGAGAT GCAGGCTCAC AATTGGCCGA TTAACTTATC GGTGAATGTG
TCGACCTTTG AGTTTTGGTC CCATGAACTG CAAGATGCCT TTGTGGATTC CTTTGCCGCG
ATTACCGAGC AACTTGAGGT GACAGATTTT CCCTACGACA GGCTAACCCT TGAGATCACT
GAGTCTTTGC TGATGAAGCA ACATACACAT CTTATTGATG TGCTTAATGG TTTGCGGATT
AAGGGGATTA ACATTTCCTT GGATGATTTT GGTACTGGCT ACTCGTCCTT GTCCTATTTA
GCGAATTTCC CTATCGATCA AATTAAGATT GATAAGAGCT TTATCGACCG ATTAGATGAA
GGCAAGCGCC ACGAAGCGTT GGTGGAGGCC ATAGTGCGGT TAAGCCATGC GTTAGATTTA
ACCGTGACGG CAGAAGGGGT GGAAACTGAG TCCCAACTCA AGTTTGTGAT GTCGAATCAT
ATTCAAGAAA TTCAAGGCTA CCTTTTCTAT AAGCCTATGC CTAAAGCCGC CTTCTTTGCG
CTGTTGGCAA AGCAAGCTGA ACTGCATTAG
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| Protein sequence | MAYGVNLPDL LDHADVKLAH NVSIACYSSV LSMLLNGAPL HEILHALVLK IEAQKIGTRG
SVLLLSGDGK RLLLGAAPHL PDSYNQAING VEIGPNVGSC GTAAYFAKRV IVEDIATHPY
WENYKELPLR AGLKSCWSEP IKDTQGKVLG TFAMYYDTIK SPTELDLELI SEAARLASLA
IERSRAMEFQ RLAVKIFDRL PLALVISNSD DSVLYANPAF KHIVLPQDID IANFNPKMFL
SASQPNELVG LFEHLAQDKM WQGELVGLRG NGEEFYLDLI VTTFLEPNGL QPCFAWLFSD
ISERKKAAQL IKYQANNDSL TGLANRNALF KLIQSLITSD SLTPGFSFML MDLDNFKQVN
DTHGHDKGDA LLVQVVRQIC ECLNDTMVFA RLGGDEFALL LPGIVNQKEL AQLAETINKH
VAKRYVLADG KGVYSSVSIG IARFPEDALD LEQLLNCADQ AMYISKANGR NRYHFFTEQM
QLNAERIASL HNQLKQALDQ QTFELYYQPI VNATTGLIVR AEVLLRWQHE GQFIPPDEFI
PIAENSGLIV DIGRDVRLGA MQTILEMQAH NWPINLSVNV STFEFWSHEL QDAFVDSFAA
ITEQLEVTDF PYDRLTLEIT ESLLMKQHTH LIDVLNGLRI KGINISLDDF GTGYSSLSYL
ANFPIDQIKI DKSFIDRLDE GKRHEALVEA IVRLSHALDL TVTAEGVETE SQLKFVMSNH
IQEIQGYLFY KPMPKAAFFA LLAKQAELH
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