Gene Shew185_2023 details

Gene Information

• Locus tag: Shew185_2023
• Symbol: def
• ID: 5369622
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 2414236
• End bp: 2414727
• Gene Length: 492 bp
• Protein Length: 163 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 640830228
• Product: peptide deformylase
• Protein accession: YP_001366229
• Protein GI: 153000548
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.000549527
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGTAC TCGATATTCT AACAATTCCC GATGAGCGCC TTAAACGTAA AGCGCAACCT 
GTAAAAGATA TTGAAGCTGT TCAGGGATTT ATCGATGATT TAATCGAAAC CATGTATCAC 
ACGGACGATG GTATCGGTTT AGCGGCAACG CAAGTCGGCA GTACGGATGC AATTATTGTG 
ATCGATTTAT CTGACGGTCG CGACCAACCT CAAGTGCTGA TCAATCCTGA AATCGTCGAA 
AAGTCTGGCG AGTTTGTGGG TGAAGAAGGG TGTCTGTCGA TCCCCGGTTA TCGCGCTAAA 
GTGTCACGTT TTGAGAAGGT CAAAGTGACC GCCTTAGACA GAACGGGCAA AGCTATTGAA 
ATCGAAACCG ATGAGTTTTT AGCCATAGTA TTACAGCATG AAATCGACCA TTTACATGGC 
AAAGTGTTTA TCGAACATTT ATCCATGTTA AAACAACAAA TTGCGCTTAA AAAAGTGCGT 
AAATATGCTT AA 

 

Protein sequence

MAVLDILTIP DERLKRKAQP VKDIEAVQGF IDDLIETMYH TDDGIGLAAT QVGSTDAIIV 
IDLSDGRDQP QVLINPEIVE KSGEFVGEEG CLSIPGYRAK VSRFEKVKVT ALDRTGKAIE 
IETDEFLAIV LQHEIDHLHG KVFIEHLSML KQQIALKKVR KYA