| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2001 |
|---|
| Symbol | |
|---|
| ID | 5372185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2383486 |
|---|
| End bp | 2386089 |
|---|
| Gene Length | 2604 bp |
|---|
| Protein Length | 867 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640830205 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001366207 |
|---|
| Protein GI | 153000526 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00988263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGTT CTGTATTTTT GTGCGCTGTT TTTGGGTTGG CCTTGTCGCC CGTTGCTTTA
GCTGTAGCCA ATGAACTAGA AAAAACAACT GAGCAACCTA CCGCAGATGC ACCGGTCGAG
CGAGTCGCAG TCACAGGTTC ACGTCTAAAA GGGGTGGATA TGGAAGGCGC TAATCCACTA
CAAAGTTTTA CCCAGGATGA CATCACTAAA CGCGGTTACG AGAGTGTGAG TGAGTTTCTA
CGCGATCTCC CACAAGCTTC AAGTGCGGGG ACTTTCTCGG AAACAGGGGG TGTCGGTGGA
GCCGATGGAG CACCAGCTGG CGCATCCGGT GTCAGTTTGC GCGGATTGGG TTCAAGCTCA
ACCTTAGTGC TAGTCAATGG CCGAAGAGTC GCCGTTGATT CCTTCTCTAA TGGTTCTGAC
TCGTTTGTGA ACGTCAATTC TATCCCTTTA TCTGCCATTG AACGCATCGA TGTGTTAACC
GATGGTGCAT CGTCCATCTA TGGTTCGGAT GCCATTGCCG GTGTAATTAA CTTTATCCTC
CGTAAGGATT TTGTCGGGCA TGAGCTCAGT GCCCAATATG GGGATGATAC TTCTGATCAC
GATGCCAGCC GTAAGAATCT GACCTACGCT GGCGGCTTTG CCACAGAAAA CAGCAATACT
ACGGTTGTAG TCGATTATGC GACGCGAAAC GCCATCTTTA ATAGCGATAG ACCTGTTAAT
GTCACCTTTG AATCTAGCAC TCGTATGACC ATAGATGGTG AAGATTACGC TGAGTCTTGG
TGTGGCGATG ATACCCAAAA AAGTGGTACA CATTGCAATT ATGACTATGT TATTCAACGC
GCTATCCAAC CTGACTTTGA GAACATAGGC ACGACCTTTA ATCATATTTA TCGTCTAGAT
AATGGATTGG AGTTTTTTGC TGAAGGCATG TATCAAAAGA ATACCGGTTC AGCCTATGAG
GCGCCTGCGG GATATACAGT GGATGTTGCT GGTGATTCTG CCAACATTCC CCAGTATGTT
CACGACATTG ACATGCTAGA TGGCAGTGTC AGCGACGTTA TCACTGTTCG AACTCGTTTC
CCTGAGCGTC GAGTACAGGA ATATGACACT CAGAGCTATC GAGTCCTCGC TGGACTGCGC
GGTGAACTTG CCGACTGGAG CTGGGAAACC GCGGCGAGTT ATGGCAAATC AACAAACGAA
ATCACCAATG TTGCTGGCTA TATGAATGCC ACTAAACTGG ATGCCGCCGT GACGGCGGAT
GAATTTAATC CGTTCAATTT AGGCCGTGAT AGTAGCGCTG CACAAATTGC TGCCCTGCGC
GATCCCGGCA TTCGTAAAGG TGAATCAGAG GTGTTGTCGC TGGATTTTAA TATCAGTGGC
GATCTGTTTG CATTACCCGC AGGTACAGTA AGCTCGGTTT TTGGTGGAGA GCTGCGAAAA
GAGCAAATAT TTGATAGGCC ATCCATCAAC GCCGTTAATA ACGAAATTAT CGGCTTAGGC
GCAAGCGATG CCGAAGCGGA CCGGACGCAA TATGCTATGT ATGGCGAGTT TAATTTCCCC
ATTACCGACA CCTTAGATGT GATCGCAGCT TTACGTTACG ACCACTATAG TGACTTTGGT
GGCGATGTTA ACCCTAAAAT ATCAATGCGT TATCGCCCTC TTGAGGATTT AGTATTAAGG
GCATCATGGA GTACAGGTTT TAGAGCCCCT TCCTTATCCC AATTAGGCGC AGGGACGTCG
CTCAGCAGCC AGTATATCAA TTGCGGTTCG GCCGAACCTT ACAATGCCTT ATGCGGTACT
GTTGGCGCCG AGTTTGGCGA ACTCGAGTTT GACCAAGAAA CCATAGGCAA TAAGGATTTA
TCCGCAGAAA AATCTGCCGC CATTAACGTT GGCGTCTCTT GGAACCTCAC CGAAGCACTA
CAATTGACCG TCGATTACTG GCGCTACGAG CACGATGATA TTGTTGATAT TGATGCCAAC
ACTACCTTGG GCGCCTGTAT TAAAGACAGT ACAAAAATCG TGACTAGCGT TGCAGAACTG
GGGGATGAAT TTGGCTGTGT TGTTGATGGC CAAGGGGATA TCAGCTTCTT ACGCACCGGC
TATTTTAACG TCGGCAATCA AAATACTGAT GGCATCGACT ACAAGCTAGA CTATCGCTTA
GACACTGAAA CCGCAGGTGA ATTTAAGTTT TATGTTGCGG GCACTGAAAC CCTGTCATTT
GAAAGACAAG TTACACCTTC AACCCCAGTG GAAGATTTAT TAGGGCGGTT AAGTGGCGCC
TCCGAAATTG CTCGCCCTGA AAGCGTGCTT GATCTAGGAA CCGACTGGCA GCTCAACGAT
TGGAGTGCCA GTTTATCGGG TCACTACATC AGTTCATTGG GTGATGGTGA CTTTAAATTT
GATAACGAAA CCGTCGACAG TTGGCTCACC TTCAGTGCGA GCCTTGGTTA TGAGTTAAAT
GAGCACCATA GCTTTTTGGT GTCAGTACGT AACCTGACAG ATGAAGAACC GCCCTACGCC
TCCTCTCCAA CCAATGGCTA TGCAAGCTCA GTCCATGATT GGTTAGGCCG TCGCTGGAAC
GTACGTTATA CCTTCAAGTT TTAA
|
|---|
| Protein sequence | MRSSVFLCAV FGLALSPVAL AVANELEKTT EQPTADAPVE RVAVTGSRLK GVDMEGANPL
QSFTQDDITK RGYESVSEFL RDLPQASSAG TFSETGGVGG ADGAPAGASG VSLRGLGSSS
TLVLVNGRRV AVDSFSNGSD SFVNVNSIPL SAIERIDVLT DGASSIYGSD AIAGVINFIL
RKDFVGHELS AQYGDDTSDH DASRKNLTYA GGFATENSNT TVVVDYATRN AIFNSDRPVN
VTFESSTRMT IDGEDYAESW CGDDTQKSGT HCNYDYVIQR AIQPDFENIG TTFNHIYRLD
NGLEFFAEGM YQKNTGSAYE APAGYTVDVA GDSANIPQYV HDIDMLDGSV SDVITVRTRF
PERRVQEYDT QSYRVLAGLR GELADWSWET AASYGKSTNE ITNVAGYMNA TKLDAAVTAD
EFNPFNLGRD SSAAQIAALR DPGIRKGESE VLSLDFNISG DLFALPAGTV SSVFGGELRK
EQIFDRPSIN AVNNEIIGLG ASDAEADRTQ YAMYGEFNFP ITDTLDVIAA LRYDHYSDFG
GDVNPKISMR YRPLEDLVLR ASWSTGFRAP SLSQLGAGTS LSSQYINCGS AEPYNALCGT
VGAEFGELEF DQETIGNKDL SAEKSAAINV GVSWNLTEAL QLTVDYWRYE HDDIVDIDAN
TTLGACIKDS TKIVTSVAEL GDEFGCVVDG QGDISFLRTG YFNVGNQNTD GIDYKLDYRL
DTETAGEFKF YVAGTETLSF ERQVTPSTPV EDLLGRLSGA SEIARPESVL DLGTDWQLND
WSASLSGHYI SSLGDGDFKF DNETVDSWLT FSASLGYELN EHHSFLVSVR NLTDEEPPYA
SSPTNGYASS VHDWLGRRWN VRYTFKF
|
|---|
| |