Gene Shew185_1996 details

Gene Information

• Locus tag: Shew185_1996
• ID: 5369841
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 2375905
• End bp: 2377893
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640830200
• Product: glucose-methanol-choline oxidoreductase
• Protein accession: YP_001366202
• Protein GI: 153000521
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG2303] Choline dehydrogenase and related flavoproteins

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCTC AAACCAATTA CGATGTCATT ATTGTGGGCT CTGGTATTGC GGGCTCTATC 
ATGGCTTATC AACTGGGGAT GGCGGGGAAA AAAGTATTAA TCCTCGAAGC AGGGCAGGAA 
GTGCCTGTTG ACCGCAGTGG TTACATGGAA ACCTTTTTTA AAGCCAATGC CAAAACACCT 
GAATCACCTT ATCCTCCTAC CACGCAAAAT CCAGCGGCAT CGACGGCGGA TAATCCACTC 
GGGCTGCCTG ATCCTGCGAA GGAAAATGTG CCGCGTTATA CCGTGTTGCA AATTGGCGCA 
TGGCGCAATC CAAAGCAATG TTATTTCGAC TACACACCGC AGCCTGAGCA TTTGAAACCA 
GACAGTCCTG AAGCAAAGTT TGCTTTTGCC AGTTCTTATG AGCGCATTGG CGGCGGCACA 
ACTTGGCATT GGCTAGGAAC CAGTTTGCAT TTACTACCCA ATGACTTTGA ATTGCAAACC 
CAGTATAAGC AGGGCGTGGA TTGGCCCGGT GGAAAACAAT TTTATCAGGC GCTGGTTCCT 
TACTATGAAC AGGCGACCAA TGAGATTGGC GTCGCCGGTG ACAAAGAGGC GATGGATCAG 
CTTTATCGCG GATTTAATGT TTCACCGGAT GGCGTTTATG GCGTGAATTA CGATTATCCC 
ATGCCTGGTA TTGTTTCATC TTTAGTCGAT CAACAATACG AACAAGCGGT GAGCGATATG 
GTGTACGACA AGATTCAATT GTCAGTTACG CCAACCCCTC AGGGGCGTAA TTCATTACCG 
GGTGAACGCC GTCAATGTGC GGGTAATACG AATTGTATTC CTATTTGCCC AATCCAAGCC 
AAATACGATG CCACTGTGAC GCTCGGACGA GCATTGCAAA CCGGCAATGT TGATGTGTTT 
TATCGTCACG TTGCGACAAA TGTTCAAGTG GATGAAAACA CAAAAGATGT TGTTGGTATT 
GATTATGTAA CCTATCAAAC TCACGGAGGG ATAGCGACGG GCGGGGGTAC TGTTACAGCT 
AAAAAATATG TGATTGCCGC TCACGCGATT GAGACGCCTA AATTATTGCT CATGTCCAAG 
CGTAATAAAG CCTGTCCGAA CGGTGTTGCC AACCATAGCG ATCAAGTTGG GCGTAATTTG 
ATGGACCACA TTATGTATTT GGCCTGGGGT TTGGCTAAAG ATCCTGTCTA TGGTTTTCGA 
GGACCTCTAT CTACTGCGGG CATCGAAAGC TTACGCGATG GCGCCTTTCG TAAAGACCGT 
GCCGCCTATC GTATTGAAAT CGGCAATGAG GGTTGGCAGT GGGCTGCGAA CGATCCATTC 
ACTACCTTAG CCGACTTTGT ATTTGGTCAA AATAATTCGC AATTAAATGG GGATTCTGTC 
AACCAACAGG GTATTCCATT GCGCTTTGAC CCGGCAATGC CCGCAAATAG CAGCTTATTT 
GGTGCCTCGT TGGTGAATAC CTTAAATGGT ATTTACATAC GGCAAATTCG TATGGGCTAT 
CTAATTGAGC AATTGCCGGA TCCGGAAAAC CGTGTAGAAC TGTCTGAGAC CTTGACTGAT 
AATTTAGGTT TACCGCGCCC AAAATTAACC TATCGAGTCC GCGAAGATTA TGTGCGCAAC 
GCATTTGTCT CGGCTAAAGA TATTTCGACC AAACTTTTTG ATGCCCTTGG TGCGCGGGAA 
TATACCAAGG CTCCGCCTGC GCCGGTTTTC TATGGTGATA AGCGTGAGGT GACGTCGAAT 
AATTTTGAAT ATCAAGGCAA TAATTTTACG TTTTACGGTG CTGGACATAT TGTGGGGACC 
TATCGAATGG GGGACTGCAA AGATACGTCG GTGGTGAGTC CTCGCCAGCA AACTTGGGAT 
CATAGCAATC TGTTTTTAGT CGGTAGCGGC GTGTTTCCAA CGGTTGCGAC GGGTAATCCC 
ACCCTCACTT TGGCAGCGTT GGCATTTCAG GCAGCAGATC ATGTATTAGC AGATCTCAAA 
GCAAGTTAA 

 

Protein sequence

MSAQTNYDVI IVGSGIAGSI MAYQLGMAGK KVLILEAGQE VPVDRSGYME TFFKANAKTP 
ESPYPPTTQN PAASTADNPL GLPDPAKENV PRYTVLQIGA WRNPKQCYFD YTPQPEHLKP 
DSPEAKFAFA SSYERIGGGT TWHWLGTSLH LLPNDFELQT QYKQGVDWPG GKQFYQALVP 
YYEQATNEIG VAGDKEAMDQ LYRGFNVSPD GVYGVNYDYP MPGIVSSLVD QQYEQAVSDM 
VYDKIQLSVT PTPQGRNSLP GERRQCAGNT NCIPICPIQA KYDATVTLGR ALQTGNVDVF 
YRHVATNVQV DENTKDVVGI DYVTYQTHGG IATGGGTVTA KKYVIAAHAI ETPKLLLMSK 
RNKACPNGVA NHSDQVGRNL MDHIMYLAWG LAKDPVYGFR GPLSTAGIES LRDGAFRKDR 
AAYRIEIGNE GWQWAANDPF TTLADFVFGQ NNSQLNGDSV NQQGIPLRFD PAMPANSSLF 
GASLVNTLNG IYIRQIRMGY LIEQLPDPEN RVELSETLTD NLGLPRPKLT YRVREDYVRN 
AFVSAKDIST KLFDALGARE YTKAPPAPVF YGDKREVTSN NFEYQGNNFT FYGAGHIVGT 
YRMGDCKDTS VVSPRQQTWD HSNLFLVGSG VFPTVATGNP TLTLAALAFQ AADHVLADLK 
AS