Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1944 |
Symbol | |
ID | 5370439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 2320677 |
End bp | 2322221 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640830147 |
Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
Protein accession | YP_001366150 |
Protein GI | 153000469 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000179497 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATCTA ACCATGAAAT GTCTGTCAAT TCTGTGATTA AGCAAGCCGA CTTTATTGAA AGTGTGGCGG ATGCTTTGCA ATACATCTCT TATTACCACC CGAAGGATTT TGTGGATGCC ATGAGCCAAG CTTATGAGCG TGAACAAAGT GCGGCGGCGA AGGATGCCAT TGCCCAGATC TTAATTAACT CGCGTATGTC GGCCGAAGGC AAGCGTCCTC TGTGTCAAGA CACTGGGATT GTGACCACCT TCGTTAAAGT GGGTATGGGT GTCCAATGGG ACAAAACCGA TATGACAATT CAGGAAATGG TCGACGAAGG TGTTCGTCGT GCCTATACCA ATCCTGATAA CCCACTGCGT GCATCAATAG TGTCAGATCC TGCGGGCAGC CGTAAAAATA CCAAAGATAA CACGCCATCT GTGGTGCATA TCGACATGGT GCCAGGCAAC CACATCGAAG TAGCGATAGC GGCCAAAGGC GGCGGCAGTG AAAATAAAGC TAAGATGGTG ATGTTAAACC CATCTGATGA TATCGCCGCT TGGGTAGAAA AAACGTTACC GACGATGGGC GCAGGCTGGT GTCCACCGGG TATGCTGGGT ATCGGCATTG GCGGTACGGC AGAAAAAGCC GCCGTATTAG CCAAAGAAGC ACTGATGGAA AGCGTGGATA TCCATGAGTT GATGGCCCGT GGCGCGCAAA CGACCGAAGA AAAGCTGCGT TTAGACATTT TTGAGCGCGC GAACAACTTA GGTATAGGTG CCCAAGGTCT CGGCGGTTTA ACCACAGTGT TAGACGTTAA AATCAAATCG GCGCCAACCC ACGCGGCTTC AAAGCCTGTG GTGATGATCC CTAATTGCGC GGCCACTCGC CACGTACATT TCCATTTAGA CGGCTCAGGT CCAGCTGAAT TAACGCCACC ATCATTGTCA GATTGGCCAG AAATCACCCG TGAAGTGGGT GATGATGTGC GCCGCGTTAA CTTAGATACT GTGACCCAAG CCGATATCGA GCAGTGGCAG AGCGGTGAAA CCATTCTGCT GAGCGGTAAA ATGCTCACAG GTCGTGATGC GGCCCATAAG CGCATTCAAA GCCTAATCGA AAGTGGTGAA GGTCTGCCAG AAGGCGTGGA CTTTACGGGT AAATTTATTT ACTACGTTGG CCCCGTTGAT CCAGTCGGTA CTGAAGTTGT CGGTCCTGCG GGCCCAACCA CAGCAACCCG TATGGATAAA TTCACTGACT TAATGTTAGA GAAAACTGGC TTGATGGGCA TGATAGGTAA AGCTGAGCGC GGCCCTGCGA CAGTTGAATC GATCAAAAAA CACAAAGCGG TATATCTTAT GGCCGTTGGC GGCGCTGCGT ATTTAGTGTC AAAAGCGATT AAACATTCTC GCGTCGTGGC CTTTGCCGAT TTAGGCATGG AAGCGATTTA CGAGTTTGAC GTGCAAGATA TGCCAGTGAC TGTGGCTGTG GATTCAAATG GCGTGAACGC CCATGAAACT GGCCCAGCAA TTTGGAAAGT GAATATCGCC AACGCGAAAG CCTAA
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Protein sequence | MSSNHEMSVN SVIKQADFIE SVADALQYIS YYHPKDFVDA MSQAYEREQS AAAKDAIAQI LINSRMSAEG KRPLCQDTGI VTTFVKVGMG VQWDKTDMTI QEMVDEGVRR AYTNPDNPLR ASIVSDPAGS RKNTKDNTPS VVHIDMVPGN HIEVAIAAKG GGSENKAKMV MLNPSDDIAA WVEKTLPTMG AGWCPPGMLG IGIGGTAEKA AVLAKEALME SVDIHELMAR GAQTTEEKLR LDIFERANNL GIGAQGLGGL TTVLDVKIKS APTHAASKPV VMIPNCAATR HVHFHLDGSG PAELTPPSLS DWPEITREVG DDVRRVNLDT VTQADIEQWQ SGETILLSGK MLTGRDAAHK RIQSLIESGE GLPEGVDFTG KFIYYVGPVD PVGTEVVGPA GPTTATRMDK FTDLMLEKTG LMGMIGKAER GPATVESIKK HKAVYLMAVG GAAYLVSKAI KHSRVVAFAD LGMEAIYEFD VQDMPVTVAV DSNGVNAHET GPAIWKVNIA NAKA
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