Gene Shew185_1944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1944 
Symbol 
ID5370439 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp2320677 
End bp2322221 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content50% 
IMG OID640830147 
Producttartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit 
Protein accessionYP_001366150 
Protein GI153000469 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000179497 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATCTA ACCATGAAAT GTCTGTCAAT TCTGTGATTA AGCAAGCCGA CTTTATTGAA 
AGTGTGGCGG ATGCTTTGCA ATACATCTCT TATTACCACC CGAAGGATTT TGTGGATGCC
ATGAGCCAAG CTTATGAGCG TGAACAAAGT GCGGCGGCGA AGGATGCCAT TGCCCAGATC
TTAATTAACT CGCGTATGTC GGCCGAAGGC AAGCGTCCTC TGTGTCAAGA CACTGGGATT
GTGACCACCT TCGTTAAAGT GGGTATGGGT GTCCAATGGG ACAAAACCGA TATGACAATT
CAGGAAATGG TCGACGAAGG TGTTCGTCGT GCCTATACCA ATCCTGATAA CCCACTGCGT
GCATCAATAG TGTCAGATCC TGCGGGCAGC CGTAAAAATA CCAAAGATAA CACGCCATCT
GTGGTGCATA TCGACATGGT GCCAGGCAAC CACATCGAAG TAGCGATAGC GGCCAAAGGC
GGCGGCAGTG AAAATAAAGC TAAGATGGTG ATGTTAAACC CATCTGATGA TATCGCCGCT
TGGGTAGAAA AAACGTTACC GACGATGGGC GCAGGCTGGT GTCCACCGGG TATGCTGGGT
ATCGGCATTG GCGGTACGGC AGAAAAAGCC GCCGTATTAG CCAAAGAAGC ACTGATGGAA
AGCGTGGATA TCCATGAGTT GATGGCCCGT GGCGCGCAAA CGACCGAAGA AAAGCTGCGT
TTAGACATTT TTGAGCGCGC GAACAACTTA GGTATAGGTG CCCAAGGTCT CGGCGGTTTA
ACCACAGTGT TAGACGTTAA AATCAAATCG GCGCCAACCC ACGCGGCTTC AAAGCCTGTG
GTGATGATCC CTAATTGCGC GGCCACTCGC CACGTACATT TCCATTTAGA CGGCTCAGGT
CCAGCTGAAT TAACGCCACC ATCATTGTCA GATTGGCCAG AAATCACCCG TGAAGTGGGT
GATGATGTGC GCCGCGTTAA CTTAGATACT GTGACCCAAG CCGATATCGA GCAGTGGCAG
AGCGGTGAAA CCATTCTGCT GAGCGGTAAA ATGCTCACAG GTCGTGATGC GGCCCATAAG
CGCATTCAAA GCCTAATCGA AAGTGGTGAA GGTCTGCCAG AAGGCGTGGA CTTTACGGGT
AAATTTATTT ACTACGTTGG CCCCGTTGAT CCAGTCGGTA CTGAAGTTGT CGGTCCTGCG
GGCCCAACCA CAGCAACCCG TATGGATAAA TTCACTGACT TAATGTTAGA GAAAACTGGC
TTGATGGGCA TGATAGGTAA AGCTGAGCGC GGCCCTGCGA CAGTTGAATC GATCAAAAAA
CACAAAGCGG TATATCTTAT GGCCGTTGGC GGCGCTGCGT ATTTAGTGTC AAAAGCGATT
AAACATTCTC GCGTCGTGGC CTTTGCCGAT TTAGGCATGG AAGCGATTTA CGAGTTTGAC
GTGCAAGATA TGCCAGTGAC TGTGGCTGTG GATTCAAATG GCGTGAACGC CCATGAAACT
GGCCCAGCAA TTTGGAAAGT GAATATCGCC AACGCGAAAG CCTAA
 
Protein sequence
MSSNHEMSVN SVIKQADFIE SVADALQYIS YYHPKDFVDA MSQAYEREQS AAAKDAIAQI 
LINSRMSAEG KRPLCQDTGI VTTFVKVGMG VQWDKTDMTI QEMVDEGVRR AYTNPDNPLR
ASIVSDPAGS RKNTKDNTPS VVHIDMVPGN HIEVAIAAKG GGSENKAKMV MLNPSDDIAA
WVEKTLPTMG AGWCPPGMLG IGIGGTAEKA AVLAKEALME SVDIHELMAR GAQTTEEKLR
LDIFERANNL GIGAQGLGGL TTVLDVKIKS APTHAASKPV VMIPNCAATR HVHFHLDGSG
PAELTPPSLS DWPEITREVG DDVRRVNLDT VTQADIEQWQ SGETILLSGK MLTGRDAAHK
RIQSLIESGE GLPEGVDFTG KFIYYVGPVD PVGTEVVGPA GPTTATRMDK FTDLMLEKTG
LMGMIGKAER GPATVESIKK HKAVYLMAVG GAAYLVSKAI KHSRVVAFAD LGMEAIYEFD
VQDMPVTVAV DSNGVNAHET GPAIWKVNIA NAKA