Gene Shew185_1891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1891 
Symbol 
ID5369964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp2255894 
End bp2257567 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content46% 
IMG OID640830094 
Productlong-chain-fatty-acid--CoA ligase 
Protein accessionYP_001366097 
Protein GI153000416 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0198205 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGATCAGC CTTGGATTAA TCATTTGCCA AAAGATGTGC CTGCTGAAAT TAATGTGGAG 
CAGTACTCAT CGCTTGTTGA TATGTTCGAA ACAGCGGTGG CTAAGTATGA AGACCAACCT
GCATTTATCA ACATGGGTGC CACGCTAACC TATCGTAAAT TGGAAGAACG CAGCCGTGCA
TTCGCCGCGT ATCTACAAAA TGAATTAAAG CTTGAAAAGG GCGATCGTGT CGCCTTAATG
ATGCCAAATC TGTTGCAATA CCCGATTGCA CTGTTTGGTG TTTTACGTGC CGGTATGGTG
GTCGTTAACG TTAATCCGCT ATATACCCCG CGCGAACTTA AACATCAGTT GATTGACTCG
GGCGCCAAAG CCATAGTTGT AGTGTCAAAC TTCGCCCGCA CCTTGGAAGA AGTTGTCGAA
CAAACGCCTG TTGAAAGCGT CATTATCACC AGTTTAGGTG ACCAATTAAG TGCGCCAAAA
CGCACCTTAG TGAACTTTGT GGTGAAGTAC ATTAAGAAGC TCGTCCCTAA ATACGATTTA
CCGCACGCCT TATCGATGCG CGATACCTTA TCAGCTGGTC GTCGCATGCA ATACATCAAG
CCTGAAGTGA CTAACGACGA TTTAGCGTTT TTGCAGTATA CAGGTGGCAC AACTGGGGTG
TCTAAAGGCG CGATGTTGAC CCATGGCAAT ATTGTCGCCA ACGTATTGCA GGCCGATGGC
GCTTATTCAC CTGCCTTAAA CGATGGCAGC GAGTTTGTTG TAACGGCTTT GCCGCTGTAT
CACATCTTCG CGTTGACAGT TAATTGCCTG CTGTTTTTGC ACAAAGGCAG CCAGAACTTA
CTTATCACCA ATCCTCGTGA TATCCCAGGA TTTGTGGCCG AGTTGAAAAA GTATCCTTTC
ACTGCATTGA CTGGGGTAAA CACCTTGTTT AACGCGTTAG TGAACAGTGA TGATTTTTCC
CAGTTGGATT TTTCGCGCTT AAAACTCTCT ATCGGTGGCG GCATGGCGGT ACAAAAAGCC
GTGGCGGATA AATGGCAAGC TATCACTAAG ACCCGTTTAC TCGAAGGTTA TGGTCTGACC
GAAGCCTCAC CTTTATTAAC CTGTTGTCCA TATAATTTAG ATGGTTACAA CGGTTCAATT
GGTTTCCCTG CACCTTCGAC ACTTATTCAA ATCCGTGACG ATGACGGAAA GGTATTAGCC
CAAGGCGAAA CCGGTGAACT GTTTGGTAAG GGCCCGCAAG TGATGAAAGG CTATTGGCAA
CGTCCTGAAG AAACTGCCAA AGTGATTGAC ACTGACGGCT GGTTAGCCAC GGGCGATATT
GGTTACATGG ATGAGAAAGG GTTCTTCTAT ATTGTCGATC GTAAGAAAGA CATGATCTTA
GTTTCAGGCT TTAACGTATT CCCCAATGAA GTCGAAGAAG TGGTCGCACT GCATCCTAAA
GTGATTGAAG TGGCTGCTGT TGGTGTACCA AACGACGCCA GTGGTGAGTT AGTGAAGGTA
TTTGTGGTGG CAAAAGATAA ATCTTTAACC GCTGAAGACA TCATTAAGCA CTGCCGTATT
CATTTAACGG GATATAAAGT ACCGAAGCTG GTAGAATTTA GGGACGAGTT ACCTAAAACC
AACGTGGGTA AGATCTTGCG ACGAGAGCTT AGAGACGAAG CTAAGCGCGC GTAA
 
Protein sequence
MDQPWINHLP KDVPAEINVE QYSSLVDMFE TAVAKYEDQP AFINMGATLT YRKLEERSRA 
FAAYLQNELK LEKGDRVALM MPNLLQYPIA LFGVLRAGMV VVNVNPLYTP RELKHQLIDS
GAKAIVVVSN FARTLEEVVE QTPVESVIIT SLGDQLSAPK RTLVNFVVKY IKKLVPKYDL
PHALSMRDTL SAGRRMQYIK PEVTNDDLAF LQYTGGTTGV SKGAMLTHGN IVANVLQADG
AYSPALNDGS EFVVTALPLY HIFALTVNCL LFLHKGSQNL LITNPRDIPG FVAELKKYPF
TALTGVNTLF NALVNSDDFS QLDFSRLKLS IGGGMAVQKA VADKWQAITK TRLLEGYGLT
EASPLLTCCP YNLDGYNGSI GFPAPSTLIQ IRDDDGKVLA QGETGELFGK GPQVMKGYWQ
RPEETAKVID TDGWLATGDI GYMDEKGFFY IVDRKKDMIL VSGFNVFPNE VEEVVALHPK
VIEVAAVGVP NDASGELVKV FVVAKDKSLT AEDIIKHCRI HLTGYKVPKL VEFRDELPKT
NVGKILRREL RDEAKRA