| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1866 |
|---|
| Symbol | |
|---|
| ID | 5371573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2223924 |
|---|
| End bp | 2225264 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640830069 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001366072 |
|---|
| Protein GI | 153000391 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.287595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTC AAATATTACG AAAAAACAAT AATCGAGGCT TCAACTTGTT AGAGATAATG
GTTGTTGTAG CGATTATTGG AATACTCGCG GTTGTGGCGG TTCCTTTGTA TAAAGATTAC
ATAATACGTG CGCAGGTTAC AGAAGCTTTT GTTTTTGCCG ATGCGGAAAG AATTAAAGTC
ATTGAAAAAC GTATTGAAAG CACCAACGTT GATATTGCAA CATTCTCTGA ACCAAAAGTA
CATATGACTT CTTTGATGTG GGTGCCTGTA ATAAATAACC AACCAGTCGA AAATTCGGTT
ATCGGATATA TTCTTCCCAC TATGGATTTA AAAGGTCTTG GGGTGAGAGA TACGTTTGCG
CTTGAGTATT TTTACAATGG CTCTTGGCGT TGCGTTAATG CTGCCAATGC GATTGGTCGC
GATGCAGTGT CTACCAATAA AGCGCTTGAT GACAAGTACC TCCCAAGTAG CTGTCGTACC
GGAGCCGGCT TGTTGGCGGC ACATCCTAAG GCTCCTGCGG GCTGCCCCCC TGGGACTCAA
AAAGCACAAG TGAAAGATGC TAGCGGGAAA CAGCAGCAAG TCTGCCAGCG ACCTAAGCCT
CAGGTACAAC CGCAGGCACA ACCGCAGGCT CAACCTCAGG CTCAACCTCA GGCACAACCT
CAGGCACAAC CTCAGGCACA ACCTCAGGCA CAACCTCAGG CACAACCTCA GGTGAAACCT
CAGGCTGTGG TTAAGCCCCC CTCCTGTCCT ATAGGCCAAG ACTGTAGCCA TAAGGATCCT
AAATGTTCAG TAGCGGGACA AGAACACATA GATCAAACCT CGGTTCCTGT ACGTGATGCA
TACAACCCGT TTCCAGCGGT TGGGGCGGGG ATTTACACCA CTAAGAGCCA AGCTGTGCCG
ACGGGTTGTG TAGCTAAGTG TAAACCCGGT TTTGTTTTTA ATCCCAATGA ACCTTCAAAG
TGCTCAATAG CCCCCTCAAC AAATAATCAT ACTTGTCGAG GCCCCAAATT TATTTGTGAG
CGAAGCCATG TCACTACAGG GGCCGCGTGT ACAGTTGACG CGCCTTATGC TGCCAATTTT
ATTGAAAATT TAAAAGATGG TTCTCGTTAC GTGACAAGAG GCTGTGTTAC ACAGCAAGAG
GCATTTGCAG CTGACAAGTA CAATAAAGGC AATGACAATT GTAAAAATTA TAATGTTGTA
GTGCTACAAG ACGCTCACTT TAAATGTACA TTCGCTTGCT ATGGTGATGC TTGTAATCTT
GAATCTGTTC CAGATCATCC AGCAACATGG GCCGATGGTA AATCGTCAAC GGATTTACCT
GATCAGTTTA ATACTCCTTA A
|
|---|
| Protein sequence | MNAQILRKNN NRGFNLLEIM VVVAIIGILA VVAVPLYKDY IIRAQVTEAF VFADAERIKV
IEKRIESTNV DIATFSEPKV HMTSLMWVPV INNQPVENSV IGYILPTMDL KGLGVRDTFA
LEYFYNGSWR CVNAANAIGR DAVSTNKALD DKYLPSSCRT GAGLLAAHPK APAGCPPGTQ
KAQVKDASGK QQQVCQRPKP QVQPQAQPQA QPQAQPQAQP QAQPQAQPQA QPQAQPQVKP
QAVVKPPSCP IGQDCSHKDP KCSVAGQEHI DQTSVPVRDA YNPFPAVGAG IYTTKSQAVP
TGCVAKCKPG FVFNPNEPSK CSIAPSTNNH TCRGPKFICE RSHVTTGAAC TVDAPYAANF
IENLKDGSRY VTRGCVTQQE AFAADKYNKG NDNCKNYNVV VLQDAHFKCT FACYGDACNL
ESVPDHPATW ADGKSSTDLP DQFNTP
|
|---|
| |