Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1838 |
Symbol | |
ID | 5372434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 2204585 |
End bp | 2205532 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640830041 |
Product | DNA ligase |
Protein accession | YP_001366044 |
Protein GI | 153000363 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00105408 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCATA CCAGCCCGTT ACAAGATTTA ACATTTCATC GGTTTATCCG CTTTCGTTTT TTCAAACAAC GCCTGCTCTT ACTCAGTCTG CTGATATTCG GTTGTTTAGC CCCAGTGACC TATGCGCAAA ACTCTCCACC TTCGATACAG TTGGCAACTG AGTTTGATGC CCAGCAAGAG ATTCATATTC AGGACTTTTT GATTAGCGAA AAACTCGACG GGGTGCGAGG TTACTGGAAT GGTCAGGCAC TATTGACCCG GCAAGGTAAT CTTATTGCTG CTCCGACATG GTTTATCGCG AATTTCCCGA ATTATCCCCT CGATGGTGAG TTATGGCTTG GGCGAGGCCA GTTTGAGGCT ATGTCGAGCA TAGTTCGACA AACCTCAGCC AAGGATGATG ACTGGCGCAA AGTGCGATTT ATGGTGTTCG ATGTTCCCAA GGCGGGTGGC GACTTTCAGC ATCGCTATCA ATTTGCGTTA ACTAAACTGA GTGGCAAATC GCATTATCTT GAAGTCATAG CGCAGTTCCA AGTGGACAGT CTTGAAGCTC TGTATCAAAA ACTTGATAGC TTAGTTGCTA AAGGCGCTGA AGGATTAATG CTGCATCGCA GCTCCGCGAT GTATGTCAGT GGCCGCAATC CTAATTTGAT GAAATTAAAA CCCTATTATG ATGCTGAAGC GACAGTGATC GGCCATATAC CAGGGAAAGG TCAATTTGCA GGGCAAATGG GTGCAATAAG AGTGCAAACC CCAGACGGCC GGATTTTCAA CATAGGCACA GGTTTTAATC TCGCAGAGCG TCAGCATCCT CCCGCTGTGG GTGCAATCAT CACCTATAAA TATCTGGGTC TTACCGTAAA TGGCTTACCC AGATTTGCCA GTTTCCTGCG GGTACGCGTC GATTTAGATG AGAGTAATAA AGTCATTTCA TCGCAAGAAG GAAACTAG
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Protein sequence | MTHTSPLQDL TFHRFIRFRF FKQRLLLLSL LIFGCLAPVT YAQNSPPSIQ LATEFDAQQE IHIQDFLISE KLDGVRGYWN GQALLTRQGN LIAAPTWFIA NFPNYPLDGE LWLGRGQFEA MSSIVRQTSA KDDDWRKVRF MVFDVPKAGG DFQHRYQFAL TKLSGKSHYL EVIAQFQVDS LEALYQKLDS LVAKGAEGLM LHRSSAMYVS GRNPNLMKLK PYYDAEATVI GHIPGKGQFA GQMGAIRVQT PDGRIFNIGT GFNLAERQHP PAVGAIITYK YLGLTVNGLP RFASFLRVRV DLDESNKVIS SQEGN
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