| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1836 |
|---|
| Symbol | |
|---|
| ID | 5372631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2203054 |
|---|
| End bp | 2203923 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640830039 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001366042 |
|---|
| Protein GI | 153000361 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000103059 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATACCG ATTTACTGAA AACCTTTCTT GAAGTCTCCC GTACTCGCCA TTTCGGTAAA
GCGGCCGAGA ATCTGTATCT CACGCGCAGT GCTGTGAGTT TTCGAGTCAA GCAGCTTGAA
AGCATTTTAG GCGTCGCGCT GTTTGAGCGG CAGCGTAATA ACATTCAGCC CACACCCGCA
GGCGAGCGCA TGCTTGGCCA TGCCGAAGCA GTATTAACGG CGTGGGAGCG GGCTAAACAA
GATGTTTCCC TTAGTCAGTT ACAGTCGACT CAGCTTGCCA TTGGTGCAGG ACCGAATATT
TGGGATGCCT ATTTGCAAGG TTATTTACAG GGATTACATG TGGGGCTGCC CGGCGTTGCG
CTGCGCACCG AAGTGCTGCC TGCCAATGCG ATGACGCGTC AATTAATGGA CCGCACCCTC
GATATCGCGA TTTCATTCGA TCCGCCAAAG CTTGATCAAT TTGAATTAGT GCAGCTGGGG
CAAATTAATT TGTTGTTGGT TTCGAGCCTA AAAGGTCAAA CGGTGACTGC CGTGCTGCCG
GGGCAATATG TGAAAGTGGA TTGGGGGACG GCGTTTAATA TTGTGCATGC GCAGGAATAT
GCGTCGCTGC CTGTTCCTAC ACTGCACACG AGCTCTGCGC GTATTGCCTT GGATTTCATC
TTAAATAATG GTGGTTGTGC TTTCTTACCC GAGCATTTGG TGCAGCATGC TTTGCACAGT
GGCGAATTGC ATCACGTCAG TGGCGCCAGC GCCATTTCAA GAAATGTGTA TGTTGCCTAT
TGGGCGGAAA ATGATCGTTT AGCCCAGATC AAACAAGCCA TCGACTTTTT AAGGGACGAT
GGCTCAGTGT TTGCTCATGC GACTATCTAA
|
|---|
| Protein sequence | MDTDLLKTFL EVSRTRHFGK AAENLYLTRS AVSFRVKQLE SILGVALFER QRNNIQPTPA
GERMLGHAEA VLTAWERAKQ DVSLSQLQST QLAIGAGPNI WDAYLQGYLQ GLHVGLPGVA
LRTEVLPANA MTRQLMDRTL DIAISFDPPK LDQFELVQLG QINLLLVSSL KGQTVTAVLP
GQYVKVDWGT AFNIVHAQEY ASLPVPTLHT SSARIALDFI LNNGGCAFLP EHLVQHALHS
GELHHVSGAS AISRNVYVAY WAENDRLAQI KQAIDFLRDD GSVFAHATI
|
|---|
| |