| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1770 |
|---|
| Symbol | nhaB |
|---|
| ID | 5372980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2129791 |
|---|
| End bp | 2131392 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640829973 |
|---|
| Product | sodium/proton antiporter |
|---|
| Protein accession | YP_001365976 |
|---|
| Protein GI | 153000295 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3067] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000537297 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCGA CAATGAGTCA GGCGTTTATT GGGAACTTCT TAGGAAATTC TCCTAAGTGG
TACAAAACCG CAATACTGTC ATTTTTAATT ATCAATCCAC TACTCTTTTT TTATGTCGAC
CCCTTCGTGG CCGGCTGGGT ATTGGTGCTT GAATTTATTT TTACCTTAGC AATGGCATTA
AAATGTTATC CATTACAGCC TGGCGGATTA TTAGCAATTG AAGCTGTCGC AATTGGCATG
ACATCGGCAA GCCAAGTCTT ACATGAAATA GAAGCCAACC TCGAAGTATT ATTACTCTTG
GTGTTTATGG TCGCTGGTAT TTATTTCATG AAGCAATTGC TGCTATTTGG CTTCACGAAA
ATTATTACCA AAGTGCGTTC TAAAGTTTTA GTGTCACTGA TGTTTTGTTT GGCATCGGCG
TTTTTATCTG CCTTCTTAGA TGCGTTAACG GTGATTGCCG TGATTATCGC GGTCGCTGTG
GGTTTCTATT CTATTTACCA CAAGGTCGCT TCTGGAAAAG ATTTCGGCGC CGATCACGAT
CATACCTCCG AAGGTAAAAA CGCTGCGGGC GAAGATCAGT TAAACGAAGA AGAACTCGGT
GCATTCCGTG GCTTTCTGCG TAATCTGTTA ATGCATGCGG GTGTCGGTAC TGCACTCGGC
GGTGTATGTA CTATGGTGGG CGAACCTCAA AACTTGATCA TTGCTGCACA GGCCAACTGG
CAGTTTGGTG AATTCGCCGT GCGTATGTCA CCTGTTACAG TCCCTGTATT GATTTCTGGT
ATCCTAACCT GCTACTTAGT TGAAAAGTTT GGCATTTTTG GTTATGGCGC TAAATTACCA
ACGGCCGTTC ATCGGATCTT ATGTGAATAT GCCGCCCATG AAGATGCGCG CCGTACCAAC
AAAGACAACA TGAAGTTAAT CGTCCAAGCG CTAGTGGGTG TCTGGTTGAT CGCAGGTCTT
GCCTTGCATT TGGCTTCAGT GGGCTTAATT GGTCTTTCTG TGATTATTTT AACCACAGCC
TTTAATGGCG TCACCGATGA GCATGCCCTT GGTAAAGCCT TTGAAGAGGC ACTGCCTTTT
ACCGCATTAT TAGCGGTGTT CTTTGCGGTT GTTGGCGTGA TTATCGATCA ACACTTATTC
GCCCCCGTTA TCCAATGGGC ACTGGGTTAT GAAGGCAATA CCCAATTAGT GATTTTCTAT
ATCGCCAACG GATTATTGTC TATGGTGAGT GATAACGTGT TCGTCGGCAC TGTGTATATC
AACGAAGTGA AGGCGGCATT GATTAATGGC CAAATAACCC GTGATCAATT CGACTTACTG
GCCGTTGCGA TTAATACCGG AACTAACTTA CCTTCGGTGG CGACACCTAA TGGTCAAGCG
GCGTTCTTGT TCTTACTGAC TTCAGCCTTA GCACCGCTGA TCCGCTTATC CTATGGCAGA
ATGGTATGGA TGGCATTGCC CTACACTATT GTGCTATCCA TTGTGGGCGT TATGGCGATC
CAAACCGGAT TCTTAGAACA AGCCACTCAA TATTTCTATG ATTCCCATAC AATCATCCAT
CACAGTGCAA AAGAAGTGTT GGGCACAGTG TCCGGACATT AA
|
|---|
| Protein sequence | MPATMSQAFI GNFLGNSPKW YKTAILSFLI INPLLFFYVD PFVAGWVLVL EFIFTLAMAL
KCYPLQPGGL LAIEAVAIGM TSASQVLHEI EANLEVLLLL VFMVAGIYFM KQLLLFGFTK
IITKVRSKVL VSLMFCLASA FLSAFLDALT VIAVIIAVAV GFYSIYHKVA SGKDFGADHD
HTSEGKNAAG EDQLNEEELG AFRGFLRNLL MHAGVGTALG GVCTMVGEPQ NLIIAAQANW
QFGEFAVRMS PVTVPVLISG ILTCYLVEKF GIFGYGAKLP TAVHRILCEY AAHEDARRTN
KDNMKLIVQA LVGVWLIAGL ALHLASVGLI GLSVIILTTA FNGVTDEHAL GKAFEEALPF
TALLAVFFAV VGVIIDQHLF APVIQWALGY EGNTQLVIFY IANGLLSMVS DNVFVGTVYI
NEVKAALING QITRDQFDLL AVAINTGTNL PSVATPNGQA AFLFLLTSAL APLIRLSYGR
MVWMALPYTI VLSIVGVMAI QTGFLEQATQ YFYDSHTIIH HSAKEVLGTV SGH
|
|---|
| |