Gene Shew185_1742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1742 
SymboltolB 
ID5369857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp2095041 
End bp2096369 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content46% 
IMG OID640829938 
Producttranslocation protein TolB 
Protein accessionYP_001365948 
Protein GI153000267 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000714613 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAATAT TGGCAAAATG GTTAGCATTG GCAGTTCTGC TATGCACCAC CCCCGCAAAA 
GCGGCATTGG ATATTGTGAT CACAGAAGGT GTTGACGCTG CGCGTCCCAT CGCTGTGATG
CCTTTTGTTT GGCAAGGTCC TGGCGCCGCA CCGCAAGCGA TTGCGGATGT AGTGATGTCG
GACTTAGTGC GTAGCGGTAC GTTTAAACCT TTAGACGAAC TTGGACTACC TCAGCGCAAT
ATTGGCACTG TGGCACAGTT TCAAGCTAAT TCTTGGTCAA GTGTTGGCGC CGAAGCGTTA
GTGCTAGGTA CCGTTAAACC TTATGGTACC GATCAATATT TGGTGAGCTT TGATTTAATC
GATTTAGTCA AAGCCCAAAA CCAAGCGTTG AAAGGCCCAG TTAGTGCAAC AGAATTTTTG
ATGGACAGCC GTCAAACTGT GATTTCAGCG GCGCAATTTC GCCAATATGG ACACAGGATC
AGCGATATCG TCTATGAAAA GTTAACCGGT ATTCGCGGCG CATTCTTAAC GCGGATCTCC
TATGTTGTGG TCAATCATAC TCAAAAAGCT CCATATCAAT TGATGGTTGC TGATTATGAT
GGCGTCAATG AACAAATGTT ACTGCGCTCG CCAGAGCCGT TGATGTCACC GACTTGGTCA
CCCGATGGTC GTCGTTTAGC GTATGTTAGC TTTGAAAACA AAAAAGCTGA GATCTTCGTG
CAAGACCTTT ATACCCAAGT GCGCACTAAA GTGAGCTCTT TCCCTGGTAT TAACGGTGCG
CCGGCGTTCT CACCCGATGG AAAATCTTTG GCGATCACTT TATCTAAAGA CGGTCAGCCT
GAAATTTACA TCATAGATAT TGCGACCAAA GCCATTAAGC GTATTACCAA TCACTATGCT
ATCGATACTG AGCCATCATG GTATCCTGAT GGAAAGTCGT TGATTTTTAC ATCAGAGCGC
GGTGGTAGAC CACAGATTTA TCGCGTAGAG TTGAGCTCAG GTAAAGTGAG TCGCGAAACT
TTTGAAGGTG AATGGAACCT CGGTGGTTCA ATTACCCCTG ATGGTCGCAG TATGATTTTT
GTTAATCGCA CGAACGGTAA ATTTAATATT GCGCGTATGG ATTTAAGTAC GCGTTTTATG
CAGGTGCTGA CATCGACACG TTTGGATGAA TCTCCAAGTG TGGCCCCTAA TGGTACTATG
GTGATCTATG GCACCACATA CCAAGGCAAG CAAGTATTAG CAGCTGTTTC TACGGATGGA
CGTTTTAAAG CAAGATTACC GGCAGGTCAA GGTGAGGTGA AATCACCTTC TTGGTCACCG
TTTCTCTAA
 
Protein sequence
MRILAKWLAL AVLLCTTPAK AALDIVITEG VDAARPIAVM PFVWQGPGAA PQAIADVVMS 
DLVRSGTFKP LDELGLPQRN IGTVAQFQAN SWSSVGAEAL VLGTVKPYGT DQYLVSFDLI
DLVKAQNQAL KGPVSATEFL MDSRQTVISA AQFRQYGHRI SDIVYEKLTG IRGAFLTRIS
YVVVNHTQKA PYQLMVADYD GVNEQMLLRS PEPLMSPTWS PDGRRLAYVS FENKKAEIFV
QDLYTQVRTK VSSFPGINGA PAFSPDGKSL AITLSKDGQP EIYIIDIATK AIKRITNHYA
IDTEPSWYPD GKSLIFTSER GGRPQIYRVE LSSGKVSRET FEGEWNLGGS ITPDGRSMIF
VNRTNGKFNI ARMDLSTRFM QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG
RFKARLPAGQ GEVKSPSWSP FL