| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1732 |
|---|
| Symbol | |
|---|
| ID | 5371806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2083649 |
|---|
| End bp | 2085055 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640829928 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001365938 |
|---|
| Protein GI | 153000257 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000238879 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACATT CGGCACTCAA CTGGTTGTTA TTACGTCGGT CACTTGCACT TGCGACCCTC
TTGTTTGTCA TATTCTTGCT GATCCTATTG CCGTTTAAAA TCGATAGAGA ACACCAATCC
TTTGTGTCTT TTGTAAAAAC AAAGCAAATC ACACCGAGCT ATATTGAACT GCTCGGTAAA
AGCTTATCCC TGCACGATAT CATTGATTTC AATAAATCTT CTTTAGCGCC TTTTCAGTTC
GATCCCACCC GATTAATGCT GCCCCAAGGG GTGGAGCTTT CTGCTGAAGA AGCGCAAGTC
TTACGCTACT TTGATTATCT CTACTCCAGT AAAAAGACAA ATGCAGAAGA TATTTTCCTG
TATGTGGGGC TTTATCGTAG TGATGCTGTG TATTTTGCAA CCCCAATCCC AGAGGACGTA
AAAGCGCGGC TGATTAATGA CCGTACTTCG ACAAATGAGT TTTGTCAGAG CCTGCACTAT
TGTGCGAAAG ACGCGACGCC AGAGTCCTTG GCCGATGGCA TAGTGTTATC CATTCCTTAT
CAAGATGAAG TGACTGGTAA AGTCATTTTA TCTATGGCCT CGCCGATTAC ATCATCTAGC
GATCCTAATC ATTTTATTGG TGATGTGATT GCCGACACGG CCTTTATGAC GTCGGGTTTT
ATGCGTAATA AACATGTGGA ATGGCAGAAT ACAGATTATG GCACTGAGCT GGTGATCACG
ACAGATAGCC TTTGGGCTGA ACTGACGCCG GAGTTCTTGT TTTATTCGAT GACAAATCAT
TTAGATAACA TGACTTCACT GACATACAAA ATCAGTATAT TTCGTTTTAT TGTGTGGAAT
TTACCCCTGT GGTTTTTGTT ATCTATCGTG ATCTTCTTCG TTCAAATTAA TATCAATCGT
CTTAGGAAAC TTCGTACTGA GCGCCAACGG TTTAGTGAAG CGATGTTATT GGATGCTTTT
ACTCGCACCT ACAATAAGAA AGTCTATGAG ACCACGCTGT TTGATGTCGC AACTAAGGGG
CATTACGCTG TGATCTGTGT GGATGGCGAT AAAATAAAAA CCATTAATGA TACCTACGGG
CATAAACTCG GGGACATGGC GATCATGCAA ATTGTCGATG CAATGCGCGG CGTATTTCGA
GAAAACGATT TGTTAATCAG AACCGGCGGT GATGAGTTTG TCGTCATCTT AGCTAATTGT
ACTTTTGAAC GGGCTTTGGT ATTGGCTGAA CATTTACGTC AAGCGGTCGC AGAGCGGCAG
TTTTTAAATG TGTTGACCGT TTCCTGCGGT GCCGCTGATT CCCAAGACTA TGCAAACTTT
GAGGCCGTGC TGCAAGCGGC GGATAAAGCG CTGTATGAGG ATAAAAAGAA TAAGCAGGGT
AGCCGTAAGC TCGAAGCGAC ACGGTAA
|
|---|
| Protein sequence | MGHSALNWLL LRRSLALATL LFVIFLLILL PFKIDREHQS FVSFVKTKQI TPSYIELLGK
SLSLHDIIDF NKSSLAPFQF DPTRLMLPQG VELSAEEAQV LRYFDYLYSS KKTNAEDIFL
YVGLYRSDAV YFATPIPEDV KARLINDRTS TNEFCQSLHY CAKDATPESL ADGIVLSIPY
QDEVTGKVIL SMASPITSSS DPNHFIGDVI ADTAFMTSGF MRNKHVEWQN TDYGTELVIT
TDSLWAELTP EFLFYSMTNH LDNMTSLTYK ISIFRFIVWN LPLWFLLSIV IFFVQININR
LRKLRTERQR FSEAMLLDAF TRTYNKKVYE TTLFDVATKG HYAVICVDGD KIKTINDTYG
HKLGDMAIMQ IVDAMRGVFR ENDLLIRTGG DEFVVILANC TFERALVLAE HLRQAVAERQ
FLNVLTVSCG AADSQDYANF EAVLQAADKA LYEDKKNKQG SRKLEATR
|
|---|
| |