| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1709 |
|---|
| Symbol | |
|---|
| ID | 5371889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2057915 |
|---|
| End bp | 2058631 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640829905 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001365915 |
|---|
| Protein GI | 153000234 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000000621435 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAA AGCAATACGA TTTAGTGATT TTCGATTGGG ATGGCACCCT GATGGACTCC
ATCGGTAAAA TTATCACCTG TATTGAAAAT ATGGCTAAGG CATTGCGGTT ACCTATCCCA
ACCGAAAGCG ATATTCGCGA TATCATCGGT CTTTCTATGA CAGAAGCGCT GCGAGTCCTG
TTTCCTCATG GGCTCAATCT CAGCGCTTCT TCTGCTTATT CTCAGCATCA GCATCCTAAA
AATGCATTCA GCCAAGGCGA AGATGATCAA TATCAGCAGA TGCGCGCCGA GTTTAAAGCA
CAATATTTGC ATTTAGACAC CACGCCAACG CCACTCTTTG CACAAGCACG TATTTTAATC
GATGAGTTAC ATGCTCAAGG TTATCAATTA GCCGTTGCAA CCGGTAAGGC CCGTGCGGGA
CTTGACCGCG TTTTTGCGCA AACGGGCTTA GGTCGATACT TTGTTGCATC ACGCTGCGCT
GATGAAGTGC ACAGCAAACC CCATCCTGAA ATGATTTCAA GCTTGCTGAA AGAATTGAAT
ATTGCCCCGA ACCGAGCCTT GATGGTGGGT GATTCTCTGC TGGATTTGAC CATGGCGGCC
AATGCCGGGA TTGATAGTAT TGGCGTGACC TATGGCGCCC ACAGTGCCGA AAAGTTACTG
CAAGCAGGAC CTATCGCTTT GATTGACTCT CCTGCGCAAT TGCTGCAATA CCTCTAG
|
|---|
| Protein sequence | MKTKQYDLVI FDWDGTLMDS IGKIITCIEN MAKALRLPIP TESDIRDIIG LSMTEALRVL
FPHGLNLSAS SAYSQHQHPK NAFSQGEDDQ YQQMRAEFKA QYLHLDTTPT PLFAQARILI
DELHAQGYQL AVATGKARAG LDRVFAQTGL GRYFVASRCA DEVHSKPHPE MISSLLKELN
IAPNRALMVG DSLLDLTMAA NAGIDSIGVT YGAHSAEKLL QAGPIALIDS PAQLLQYL
|
|---|
| |