| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1533 |
|---|
| Symbol | |
|---|
| ID | 5371001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1853296 |
|---|
| End bp | 1855554 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640829730 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001365744 |
|---|
| Protein GI | 153000063 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4590] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0241057 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGTC AGGTCACTCA ACCTGGTCCT GCATCGCACA GTATGCTTAA AGGCGGACGC
TCGAATCGCA GGGCATTTAA GGATAAAGCG GCGCAAATCG GCGTCACTAT CGGCGGCACT
ATGGTGTTTG TTGCCTTATT GTTGATCTTC TTTTATCTGT TGTATGTGAT TAAACCCATT
TTCGATAGTG CTGATGTCAC GCCGGTTAAA ACGGTGAGCT ATCAACATGC GGATGTACCT
ACTTTAATGG TGGGCGCTGA AGAGCAAAAT GAGGTGATGT ACCGTGTGGC CGTTGATGGC
CAAGTGGACT TCTATACCGT TGCCGACGGT AGCCTACTTT CTAGCTTTAC ACCGCCGTTG
CCAGCGGGCG TGACTGTGAC CAGTGCCGCA GTTGCCGTGC CGAGCGAACA GCGTTTTGCG
CTGGGATTAA GTAATGGTCA GGTCCTAGTG GCTGGCCTAG AGTTTGGTTT AAGTTATCCA
AACAACAAGC GCTTAATCAC GCCTAAACTG CGTTATCCCG CAGGCGAGAC CCCGATTACA
GTCGATGAAA CGGGCAGTGC GATTCATAAA CTGACCTTCA CCTACAGTTC AGACAAAATG
AGCTTTGCCT ATCAAGATGA GAGCGGCGTT TGGCGCCTGA CTCGCCTTGA AGGGCAAGAG
AACATGATGA CTGAAGAAGT GGAGTGGGTT TCTACGACGT CACAAATTCA AGATGCGCCG
AAGAAAGTCT CCCATGAGCT GATGACGCCA GATCAACGTC AGTTGATGTT GCAAACTGGC
AATAAAATCT TTGTGTACGA CATCCGTGAT ACTGACAGCC TAGATTTGCT GCAGGTGATT
GATGTTGAAC GGGCTAAAGC CCAAGTGAAT AACGTGGCTT TGCTGGCGGG CGCGAGTTCA
TTACTGGTCA GCTATGACAC AGGTATTGTG GCCCAGTACT TCCAAGTTAG TGGTCCAAAA
GGGCGTTTAT ATCAGGAAAT TCGCCAGTTT GATGACTTAC CGCCTATTGA GTCTATTACC
TCTGAATTCT ACCGTAAGAG TTTTGCAACT GTGAGCCCAG AGGGCGAGCT GACATTGCTC
TACACCACGA GTCATCGCGA ACTGTTTGAC GAAAAATTCG ACCTTAAAAA CCCCGGTAAA
ATGGGCTTTA CCCCACGCTC AAACGGCATA GTCGTTGAGG CGGACAAAAA GCTGCATATC
TTCAGTGTGG AAAACTCCCA CCCAGAAGTG TCATGGAGCG CCATGTGGGA CAAGGTGTGG
TATGAGGGTT ATCCAGAGCC TAAATACGTA TGGCAATCGA CTTCGGGGTC TGATGATTTC
GAAGCTAAGC TGAGCTTAAT GCCATTGGCC TACGGCACAA TGAAAGCGGC ATTTTATGCC
ATGTTATTTG CCGTGCCTTT AGCCATTGCC GGTGCGATTT ACACCGCTTA CTTTATGTCG
CCTAAGGTGC GCGGTTTAGT GAAACCGACC ATCGAAATCA TGGAAGCCTT ACCGACGGTT
ATTTTAGGTT TCTTGGCGGG TCTGTGGTTA GCGCCGCTGA TTGAAGAACA TCTCCCCGGT
ATCTTGATTT TACTGACCCT GTTGCCGACC TCGATTCTCG CTTCGGCCTA TGGCTGGAGT
AAGTTACCTG CTATTTGGAA ACAACGTTTA CCCGAAGTGT ACCAAGAGCT GATGTTGATC
CCTGTGGTCT GTTTTGTGGG TTGGTTCTCT TTTGCGGTCA GCCCTATCAT CGAAGTGGCG
CTGTTTGATG GTAATACTCG TCAATTTATC ACCAACGAAC TAGGCATCAC CTTCGACCAA
CGTAACGCGC TGGTAGTGGG TATCGCCATG GGCTTTGCGG TTATTCCAAC GATTTTCTCT
ATCGCGGAAG ATGCGATTTT CTCTGTGCCA CGTCATTTAT CAAACGGCAG CTTAGCCTTA
GGTGCGACGC CTTGGCAGAC ACTGACTCGC GTGGTGTTGT TAACGGCAAG TCCGGGTATT
TTTTCGGCCA TCATGATGGG CCTCGGTCGC GCTGTGGGCG AGACCATGAT CGTACTGATG
GCCACCGGTA ACACCGCCAT TATGGAATGG AGCGTGTTCG AAGGGATGCG AACCTTGGCA
GCAAACATTG CGGTTGAAAT GCCTGAGTCG GCTATCGGTA GTTCGCATTA CCGTGTGCTC
TTCCTCGCGG CGTTCGTGCT ATTCATCTTT ACATTCTTCT TTAACACCAT TGCAGAAGTG
GTGAGACAGC GTCTACGTGA ACGCTATAGC TCGCTGTAA
|
|---|
| Protein sequence | MESQVTQPGP ASHSMLKGGR SNRRAFKDKA AQIGVTIGGT MVFVALLLIF FYLLYVIKPI
FDSADVTPVK TVSYQHADVP TLMVGAEEQN EVMYRVAVDG QVDFYTVADG SLLSSFTPPL
PAGVTVTSAA VAVPSEQRFA LGLSNGQVLV AGLEFGLSYP NNKRLITPKL RYPAGETPIT
VDETGSAIHK LTFTYSSDKM SFAYQDESGV WRLTRLEGQE NMMTEEVEWV STTSQIQDAP
KKVSHELMTP DQRQLMLQTG NKIFVYDIRD TDSLDLLQVI DVERAKAQVN NVALLAGASS
LLVSYDTGIV AQYFQVSGPK GRLYQEIRQF DDLPPIESIT SEFYRKSFAT VSPEGELTLL
YTTSHRELFD EKFDLKNPGK MGFTPRSNGI VVEADKKLHI FSVENSHPEV SWSAMWDKVW
YEGYPEPKYV WQSTSGSDDF EAKLSLMPLA YGTMKAAFYA MLFAVPLAIA GAIYTAYFMS
PKVRGLVKPT IEIMEALPTV ILGFLAGLWL APLIEEHLPG ILILLTLLPT SILASAYGWS
KLPAIWKQRL PEVYQELMLI PVVCFVGWFS FAVSPIIEVA LFDGNTRQFI TNELGITFDQ
RNALVVGIAM GFAVIPTIFS IAEDAIFSVP RHLSNGSLAL GATPWQTLTR VVLLTASPGI
FSAIMMGLGR AVGETMIVLM ATGNTAIMEW SVFEGMRTLA ANIAVEMPES AIGSSHYRVL
FLAAFVLFIF TFFFNTIAEV VRQRLRERYS SL
|
|---|
| |