| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1508 |
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| Symbol | |
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| ID | 5372712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 1821575 |
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| End bp | 1824844 |
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| Gene Length | 3270 bp |
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| Protein Length | 1089 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640829705 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_001365719 |
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| Protein GI | 153000038 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.76281 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACATCG TTATGAGTGA CAGCACATTT TTCTTTGGTG AATGGCAAAT CAATCCCAGC
GCCAATAGTC TGCTCCTTGG CAAACAAGTC AAACAACTTG AGCCCAAGGC GATGGATGTG
CTGTTGTTTC TCTGTCAACG GGCGGGTGAA GTCGTCAGCA GTGATGAAAT AGTCAGCCAC
TGCTGGCCGG GCGTAGATAC TGGCGACAAT CCACTACACA AGATTATCAA TCAGTTACGT
AGAGCATTAG GCGATAGCGC CACCGATCCC ACCTACATAG AAACCATACG CAAACGCGGC
TATCGCACCT TAGCCGAAGT GCGTTTTCCT ATCGGCCACG AAGCCACCGC CAGCCCGCAA
AGTTGGCAAG GCGGCTCGCC CTTTCCGGGT CTGCAAGCCT ATAGCGCTAA CTATGCCGAG
GTGTTTTTTG GTCGCAGTGA ACAAATCAGC ACTTTGCTTA ACCGTATCAG CCAGCAAATC
ATCTATGGTC GTGCCTTCTG TCTGGTTTTA GGCCCAAGTG GCAGCGGTAA ATCCTCCCTG
ATAAATGCGG GTGTTGTGCC CAATTTAATG AAGGGCGGCG GCTATAACGG CATTGGTGTC
GCGTCGTTCA GCAGCTTAGA TTTTGCCGAT GTGAGTAAAG GGCAACTGCT AACCGATCTT
GCCAGCGCTA TGCTCGACTG GGAAATCAAC GACACGCCAG TGTTCGAAGG CATGAGCGCT
GAGACACTGG CGGTTCAACT TGTCGAAGAT ATCCAAGGCG TAATCAACCA GTGCACCCAA
GCTCTCAAGG TTCAGCCCTT TACTCAGCCG TTTTTTGCCT TGTTTATCGA CCGATTAGAA
GTGTTGCTCT CATCACCGCT ATTTAGCGAC ACCGAGCGCA CAGTATTTGT TGAACTGCTG
GAACAACTCG CCACCTCTAA GGCAGTGATT ATTATCAGTG CCTGTCGCAA CGATTTTTAT
CCTTTACTTG TGGGCTACCC AAGCTTAATG GCCGGCAAAT CCCGCGGCGC CCACTTTGAC
TTAGCGCCGC CGACACGCAC TGAACTGTTG CAAATGATCC GCTTGCCTGC GGTGGCCGCA
AACTTAAGCT GGGAAGTTGA CAGCGAAACT GCGATGCCGC TCGATGAAAT GCTCTGCAGC
GACGCAGCCA GTAACCCAGA TGCACTGCCC ATGTTACAAT ACACTCTGCA GGCCTTGTAT
TTGCAGCGCA GCGCCGACGA TAAGTTATTA GTCTCGGTTT ATCATGCGCT TGGCGGTATT
GAAGGGGCGA TTGGTAAAAA TGCCGAGCAA GCGATTTCCC ATTTAAGCGA TGCCGAAAAA
GCCAGTCTGC CACGGATTTT ATCCCTGTTA GTCACCCTGC GCGAAGATGA AAAGTCCATC
ACCAGCCGCA CCGCCCGCTG GTCGCAGCTG CAAAGCACCG CCGAAACCGC CCTAGTGCAA
GCCATGGTCG ATAGCCGCTT ATTCGTGTCG CATCTGCAAA ATGGTGAACC CTGTTTTAGC
ATCGCCCACG AAGCCCTGCT GCGCCGTTGG CCACGGGCGA CGGCTTGGAT TAGCGAACAT
AGCGATAGTT TGAGCATTAA GAGTCGCCTA CAACATCTTT CAACACGCTG GCTCAGCGAA
GCCAAACACA GCGCCTATCT ACTCGCTGAA GGTAAACCTT TAAAAGAGGC CCAAGGCCTC
AGCCAAAATC CGTTATTCGA TTTAGACGAT CCCGAAACCG CCTTTATCAC AGCCTCCACC
AAACGCGCCA ATATGCTGCG CTGGACGAGG CGCTTAACCG TCACCCTATT ATGCGTCCTC
ACCCTCACTT CCATTATCAT GAGTGTGCGC AGCATAGAAG CTGAAAAACT CGCCCTGCAA
AAACGCCTCG CCGCCGAAGA TTTGCTCGGT TTCATGGTGG GCGACTTCGC CGACAAGATG
CGCGGCATCG GCCGCATGGA CTTACTCGAC GGGATCAGCA ATAAAGCACT GGAATATTTC
AGTGATTTTT CCAATAAAGA GGATGATGCA CACTTAAGCT TCGACGCCCG CTTCCAACAC
GGCCAAACCT TAGAGGCCAT GGGCGAAGTG GCATATTCGC GCAATAAAAT CGATGAAGCT
CGCAGCGCAT TACTCGCGGC GCAAGAAAAA ATGCTGCCAC TTTTGAGTTT ACAGCCGGAA
AACTTAGCCC TACTAAAAAC TCTAGGTGCC AATGCCTTTT GGTTAGGACA GCTTAAGTAT
GATGTGAGTG ATTGGGCAGC ATCACGTCCC TTCTTCGAGC AATACTTAAA ATACAGCCAA
ACGATGTACG CCCTTGCGCC CGAAGATAAA GATGCACTTA TGGAGCTGTC ATACGCCCAC
AATACTTTGG GCTCTGTGTC TATGAAGCAG CAGGAATTTG CCAAAGCGCA GCAAGATTTT
GAGGAATCAT TAAGGCTTAA ATTGCTCGCC TTAGCGAAAG CCCCCGAGGA TAGCCAGTTG
ATTGCCGATG TGGCCGATAC CCGATCTTGG TTAGCCAGCG CTGCGGTTTC TCTTGGAGAT
TTAAGTTACG CCGTACAAGC CCATCAAGAA ATCCAACAAC AGCTTGAAAG TCAAAATTTA
GAAAAACAAC CTTATTTATT AGATAGGCTC GCAGGGAGCT ATCAGAATTT AGCAACTCTA
CTAGCATATC AAGGGCATTT TTCTCAAGCA TCGTCAAAAG CAGAATCTGG ACTAGCTATT
ATTATCGATG TTCTAAAACA GGATCCAGAA AATGAAAAGT GGAAGAGACT TAAATTTTAT
TCATCATTTC AATCAATTGA ACTTTCAACT AGTACAGCAG CACCTAACGC ACAGGATAGG
CTAATAAAGG TAAAATATGA ACTTGATTCC GATGAAAAAT TTAAGCTGTC ACCAAAATAT
CAAGAAACTC TTGCAAAGTA TTATTACACT CAAGCAAAAT CATTTTTTGA GACGAAGAAT
TACAAAAACG GCACAATCAA CATTAAACTC GCAGTCAAGT TGTACTACGA CTTATCAAAA
TCATTTAAGC AGAATTATAT ATATTATTCA GATTTGAGTA TTGCAGAGCT TTTATATGCC
TCATACCTAA AGAAATCTAA AAACTCTGAC GCTGTTATAG AATTATGCAA AAATACTAAA
GAAAGACTTC AGCCTTTAGT TGAAAAAGAT AAAGACCCTA GATTTACAGT TCCTTACATA
AGAGCATTAG ATTGTCTAGG TGAACTGAGT GATGAGAAAG AACTTGCTAA CTTATTAAAG
TTAGCAGGGG TTAGTGATAT TAATTTTTAA
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| Protein sequence | MDIVMSDSTF FFGEWQINPS ANSLLLGKQV KQLEPKAMDV LLFLCQRAGE VVSSDEIVSH
CWPGVDTGDN PLHKIINQLR RALGDSATDP TYIETIRKRG YRTLAEVRFP IGHEATASPQ
SWQGGSPFPG LQAYSANYAE VFFGRSEQIS TLLNRISQQI IYGRAFCLVL GPSGSGKSSL
INAGVVPNLM KGGGYNGIGV ASFSSLDFAD VSKGQLLTDL ASAMLDWEIN DTPVFEGMSA
ETLAVQLVED IQGVINQCTQ ALKVQPFTQP FFALFIDRLE VLLSSPLFSD TERTVFVELL
EQLATSKAVI IISACRNDFY PLLVGYPSLM AGKSRGAHFD LAPPTRTELL QMIRLPAVAA
NLSWEVDSET AMPLDEMLCS DAASNPDALP MLQYTLQALY LQRSADDKLL VSVYHALGGI
EGAIGKNAEQ AISHLSDAEK ASLPRILSLL VTLREDEKSI TSRTARWSQL QSTAETALVQ
AMVDSRLFVS HLQNGEPCFS IAHEALLRRW PRATAWISEH SDSLSIKSRL QHLSTRWLSE
AKHSAYLLAE GKPLKEAQGL SQNPLFDLDD PETAFITAST KRANMLRWTR RLTVTLLCVL
TLTSIIMSVR SIEAEKLALQ KRLAAEDLLG FMVGDFADKM RGIGRMDLLD GISNKALEYF
SDFSNKEDDA HLSFDARFQH GQTLEAMGEV AYSRNKIDEA RSALLAAQEK MLPLLSLQPE
NLALLKTLGA NAFWLGQLKY DVSDWAASRP FFEQYLKYSQ TMYALAPEDK DALMELSYAH
NTLGSVSMKQ QEFAKAQQDF EESLRLKLLA LAKAPEDSQL IADVADTRSW LASAAVSLGD
LSYAVQAHQE IQQQLESQNL EKQPYLLDRL AGSYQNLATL LAYQGHFSQA SSKAESGLAI
IIDVLKQDPE NEKWKRLKFY SSFQSIELST STAAPNAQDR LIKVKYELDS DEKFKLSPKY
QETLAKYYYT QAKSFFETKN YKNGTINIKL AVKLYYDLSK SFKQNYIYYS DLSIAELLYA
SYLKKSKNSD AVIELCKNTK ERLQPLVEKD KDPRFTVPYI RALDCLGELS DEKELANLLK
LAGVSDINF
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