| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1504 |
|---|
| Symbol | |
|---|
| ID | 5372523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 1818295 |
|---|
| End bp | 1819323 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640829703 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_001365717 |
|---|
| Protein GI | 153000036 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCT CACCTAAACA GACTCGCTCA CAACATCCAT TATCACTTGT GGGTGAAGAC
AATGGCTTAC AGTGTACTGC GCAGCAAGGC TTGGTCGAGC CCGCATTGCC GTTAACCTTC
TTCGAGCATG CCTCGATTGA AACGATTCAA CAGTTTATTC AGCATCTGAC CGAGCCGGTG
ATTATCGTCA ATGCCCAAGG TTACATTTAC TTTAGCAATA GCAAAGGTGC TGACTTACTG
ACATGCCCGC AGGCCAGTTT GAAGGGACAA GATTGGCGCA ACTTTTTGAC TGAGCACCAT
CAAGCTCGCT ACGACAATCT GCTGAGCAAT GATATTAAAC TAGGCAAAAA CTGCGGCATT
CCAGTCCAGC ACTGCGCCGA AGAAATCACC CTCATTACCG CCTCAGGCAA AGCAAAAGAT
GTCGAGCTCT CCATTTCCTA CATCCCCAGC CATGAACCTC TGTTCGTGAT GATGATGCAC
GATTTAACGC AGCACAAAGC GGAGAATCAA AAGCTACGTA AATTGGCCGC CACGGATTCA
CTGACTGGGC TGGCGAACCG CCGATACTTC GACGAAATGC TGCATCACTA TTGGGAAGAA
TGCACAGGTA AGCTGCGCCC TATCAGCGTG GTGATTATCG ATGTGGATTA TTTCAAAGTG
TTTAACGACC AATTCGGCCA TATCCAAGGC GACGAATGCC TACGTAAGAT TGCCAAAGTG
ATTGCTGACA TAGTGCCAAT AGACATTGGC CTGGCAGCGC GTTACGGCGG TGAAGAATTC
GCGCTAATAC TGCCAAGCCA CAATGCCAAA ATGGCACTGA CGATTGCCCA AAAAGTGCAG
CAAGGGATTA ATGACCTGCG CTTTACTGAG CAAGGCCTGC GCGACTATGT CTCTGTGAGC
GCGAGCCAAG GGATTGCGAG TGAAATCAAT GGCCAGTTCC GTACCTCACT CGCCATGCTG
TGCGCCGCCG ATACCGCATT GTATCGCGCC AAAGCCGATG GCCGTGACAG GATCAATACG
TCGCTTTAA
|
|---|
| Protein sequence | MTSSPKQTRS QHPLSLVGED NGLQCTAQQG LVEPALPLTF FEHASIETIQ QFIQHLTEPV
IIVNAQGYIY FSNSKGADLL TCPQASLKGQ DWRNFLTEHH QARYDNLLSN DIKLGKNCGI
PVQHCAEEIT LITASGKAKD VELSISYIPS HEPLFVMMMH DLTQHKAENQ KLRKLAATDS
LTGLANRRYF DEMLHHYWEE CTGKLRPISV VIIDVDYFKV FNDQFGHIQG DECLRKIAKV
IADIVPIDIG LAARYGGEEF ALILPSHNAK MALTIAQKVQ QGINDLRFTE QGLRDYVSVS
ASQGIASEIN GQFRTSLAML CAADTALYRA KADGRDRINT SL
|
|---|
| |