| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1354 |
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| Symbol | |
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| ID | 5370117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 1625835 |
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| End bp | 1626842 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640829553 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_001365567 |
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| Protein GI | 152999886 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.308033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAAA GAACGATAAC CGTAATTCCA GGTGATGGAA TTGGCCCAAG TATTATTGAT
TCAGCCTTAA AAATTCTCGA TAAAGCGGGC TGTGATTTTG AATATGAATT TGCCGATGCC
GGCCTGACTG CACTCGAAAA GCAAGGCGAG TTACTGCCAC CGCGCACTTT AGAATTAATC
GAAAAAAACC GTATCACACT AAAAGGTCCA CTGACGACGC CAGTAGGTGA AGGCTTTACC
TCTATCAACG TGACTTTACG TAAAAAATTC GGCCTGTACG CTAACGTACG CCCAGTGATT
TCGTTCAAAG GCACTCAAGC TCGTTACGAA AATATCGATA TCATCACTGT GCGCGAAAAC
ACTGAAGGCA TGTATTCTGG CTATGGCCAA AAAGTGTCTG AAGATGGTTT GACGGCAGAA
GCGACCAGTA TCGTGACTCG CCAAGGTGCT GAGCAAATCG CCACTTTCGC CTACGAACTG
GCTCGCAAAG AAAACCGTAA AAAAGTCACT ATCGTGCACA AAGCCAACAT CATGAAGTCA
ACGTCAGGCC TGTTCCTGAA AGTGGCCCGT GAAGTGAGCC TACGTTACCC AGACATCAAG
ACTGAAGAAA TGATCGTCGA TGCAACGTGC ATGAAGTTAG TGATGAACCC AGAAAACTTC
GATGTGATCG TGACGACCAA CCTGTTCGGT GACATTTTAT CGGATCTGTG TGCCGGTTTA
GTCGGTGGTT TAGGTATGGC ACCAGGCGCA AACATTGGCC GTGATGCCGC GATTTTCGAA
GCCGTTCACG GTAGTGCACC GGATATCGCT GGTAAAAACC TTGCAAACCC AACCTCAGTG
ATTTTAGCGT CTATTCAGAT GCTGGAATAT TTAGGCATGG CTGACAAAGC TGAGCAAATC
CGTAAAGCGG TATCTGCAGT GATCGAAGAA GGCGACCGTA CCACTCGCGA TTTAGGCGGC
ACTCACGGCA CGACTGACTT CACTCAAGCG GTTCTTGAGC GTCTGTGA
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| Protein sequence | MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLTALEKQGE LLPPRTLELI
EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVI SFKGTQARYE NIDIITVREN
TEGMYSGYGQ KVSEDGLTAE ATSIVTRQGA EQIATFAYEL ARKENRKKVT IVHKANIMKS
TSGLFLKVAR EVSLRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKAEQI
RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLERL
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