| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1343 |
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| Symbol | |
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| ID | 5369775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 1614751 |
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| End bp | 1616619 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640829542 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001365556 |
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| Protein GI | 152999875 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000676774 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTGG ACATTTCTCA GTTTCCCGTG TTGGCACAGG CCAACACCCC CAATGAACTC
CGCCAGCTTC CTCAGGCACT TTTACCACAA GTAGCCGACG AACTGCGCGA GTTCCTTCTT
AAGTCTGTTG GCATATCCAG CGGACATTTT GCCTCTGGGC TCGGCACAGT GGAACTCACT
GTTGCGCTGC ACTATGTCTA CAACACCCCT TTTGATCGGC TGATTTGGGA TGTGGGCCAT
CAGGCTTATC CCCATAAAAT TCTCACGGGT CGTCGTGACA AGATGCACAC CATTAGACAA
AAAGATGGCT TGCATCCTTT CCCATGGCGT GAAGAAAGTG AATACGACAC TTTCAGCGTT
GGGCATTCAG GCACGTCTAT CAGCGCCGCA CTAGCGATGG CGATTGCCGC AGAAAAAGAG
CAAGCGGGTC GTAAAGTCGT TGCCGTGATC GGCGATGGCG CTATGACAGG CGGCATGGTG
TTTGAAGCCA TGAACCACGC TGGCGACTTG CACAATGACA TGCTCGTGGT GTTGAACGAC
AACGAAATGT CGATCTCTGA AAATGTCGGC GCCCTCAATA ACCATTTAGC ACAACTGATG
TCAGGCCGTT TCTACACTAC GCTGCGCGAA GGCGGCAAGA AAGTGTTGAA AGGCATGCCC
GTCATCAAAG AAATGGCCAA ACGCACTGAG GAACACCTCA AAGGCATGGT CGTTCCTGGC
ACCCTATTTG AAGAGTTAGG TTTCAACTAT ATCGGTCCTA TCGACGGCCA CGATGTTGAT
GCTCTGGTCG AGACCATGCG TAATATGCGC AATCTTAAAG GTCCACAGGT GCTGCACATC
ATGACGAAGA AAGGTCGTGG TTATGAACCT GCTGAAAAAG ATCCTATCGG TTGGCATGCG
GTGCCTAAGT TTGACCCGTC GCTGTTTAAA AAGCCGGCCA CCAAACCCGG TTTGCCGACC
TTTTCTCAAG TCTTTGGTAA ATGGTTATGC GACATTGCCG AGCAAGATGA GAAAGTGTTA
GCGATTACGC CTGCGATGCG CGAAGGTTCG GGCATGGTGG AGTTTTCCCA GCGTTTCCCG
AAACAATATT TCGATGCGGC GATTGCCGAG CAGCATGCTG TCACCCTATC AGCAGGTTTT
GCCTGTGAAG GCTTCAAGCC TGTAGTGGCA ATTTACTCGA CCTTCCTGCA ACGCGCCTAC
GATCAGCTTA TTCATGATGT AGCGCTGCAA CAATTACCAG TATTGTTCGC TATCGATCGC
GGCGGTATTG TCGGTGCCGA TGGTCCAACT CACCAAGGTG CATTCGATTT AAGCTTTATG
CGTTGCATCC CCAACATGGT GATCATGGCG CCGTCGGACG AAAATGAATG TCGTCAAATG
CTCTACACTG GCTATTGCTA TGATGCAGGC CCAAGTGCAG TGCGTTATCC AAGGGGCTGT
GCCACGGGAG CGACGCAAGT CGAAGCGATG ACGGCATTAC CGATTGGTAA AGGCGTGATC
AAACGTGTGG GTAAGCGCAT TGCCATACTC AACTTTGGCA CCTTGTTAGC ATCAGCATTA
ACCGCAGCCG AAAGCTTAGA TGCAACGGTT GTCGATATGC GCTTTGTGAA ACCACTTGAT
GTTGATTTGG TCAAAGAGAT GGCGCAAACC CACGAAGTGC TCGTCACAGT GGAAGAAAAC
GCCATTATGG GCGGCGCTGG TGCTGGCGTG CTTGAGCAGC TTCAAAAGCT GCGAATGCCT
AAAGCCGTGC TTCAAATTGG TTTGCCAGAT GAATTCATCA AACATGGCTC GCCAGAGGAA
GTCACCCATG ATTTGCAACT GGATGCCGAA GGTATACTGG CGCAAATCAA TGCTTATCTA
GCACAATAA
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| Protein sequence | MSLDISQFPV LAQANTPNEL RQLPQALLPQ VADELREFLL KSVGISSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDKMHTIRQ KDGLHPFPWR EESEYDTFSV
GHSGTSISAA LAMAIAAEKE QAGRKVVAVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND
NEMSISENVG ALNNHLAQLM SGRFYTTLRE GGKKVLKGMP VIKEMAKRTE EHLKGMVVPG
TLFEELGFNY IGPIDGHDVD ALVETMRNMR NLKGPQVLHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSLFK KPATKPGLPT FSQVFGKWLC DIAEQDEKVL AITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLSAGF ACEGFKPVVA IYSTFLQRAY DQLIHDVALQ QLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGYCYDAG PSAVRYPRGC
ATGATQVEAM TALPIGKGVI KRVGKRIAIL NFGTLLASAL TAAESLDATV VDMRFVKPLD
VDLVKEMAQT HEVLVTVEEN AIMGGAGAGV LEQLQKLRMP KAVLQIGLPD EFIKHGSPEE
VTHDLQLDAE GILAQINAYL AQ
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