Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1326 |
Symbol | |
ID | 5369767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 1587593 |
End bp | 1590640 |
Gene Length | 3048 bp |
Protein Length | 1015 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640829525 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001365539 |
Protein GI | 152999858 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAAG GTATTCTCTT TCCGTTAGTG CAAAATGCGG CTTTGCTGCT GGCGTTGGTA TTTTTGTACG ACGTGATCCC TAAAAAGCAT CAGCGGCAGT ATTTCTTGCT GTGGCGTATC ATTATTGGAA TGCTCATCGG TGGTATTGGT ATCACCATCA TGAGCACGCC TTGGATATAT CAACCGGGCG TTTTTTTCGA TACTCGCTCG GTTATCCTCT GTATTTCAGG CCTCTTTTTT GGTGGTTTGC CGACCTTTAT TGCTGTAGTG ATGACGGCGC TATATCGTAT CAGTATTGGT GGCGCTGGGA TGTGGATTGG CGTCGGCGTG ATAGTGTCAT CCGGGTTAAT TGGGGTGATC TGGCGTCAAT ATCGTAAATC CTATTTAGCG AACATTTCAG GTAGAGAAAT CTTTCTCTTC GCCTATGCAG TGCATATCAT AATGCTGCTG TGGTTTGTAT TTTTACCCAA TGGCATAGGA ATGCCCTTGC TTGAACAAGT CACCCTACCT GTGCTCACCA TTTTCCCCAT TGCGACTTGG CTATTAAGCC GCTTGTTATC GCGACGTTTT GAATTAGAGT GTGATGAACA AATTCGTCTG CAGGATGATT TCCTATTTCG TAGCCAATTT AACGTCGGCA ACATTGGTAT TGCGATAACG GGGATTGACC AAAAGTGGAT AAAGGTGAAT CCACGTTTAT GCCAAATGCT CAAATATTCA GAGGCTGAAT TGCTGCGGAT GACGTGGGCG CAAATTACCC ATCCCGATGA TTTAGAAAGC GATACGCTGC AATTTGAGCT CATGCTGCGC GGAGAAATCG ATAATTACGA GATGGATAAA CGTTTTATCG TGAAAGACGG CAGTGTGGTT TATACCCATA TGACAGTGGC CTGCAAGCGC GGTGGCAGTA ATACTGCGTT GCTCGTCATT GCAGGATATC TGGATATCAC CTCACAGGCC TTAGCCGACC AAGAGGTGCT TGCTAGTCGT GAACAACTCG AACTGGTGTT GAGCAGTAGC GATCTTGGAG TATGGGATTG GGATATTCGT CATGATCGTA TCGAACGTAA TGCTCGCAGC GCCGATATTC TCGGCTGCGA TGTGGATATG CTCAACGCTA ACAGTCGCCA ATGGATGGAC GCGATTGTCG CCGAAGACAG ACCTAAAGTG CTGCATTCGA TTGAGGCCCA TATTCGCGGC GAAACGGCGC AGCATAAGAT GGAATATCGT CTAAATACAC TCAATCGCAA AGTACGCTGG ATTTTAGACA CGGGCAAAGT GGTGAGCCGT GACGCCAATG ATAATGCTCT GCGGATGTGC GGAACCTATA CCGATATTAC CGACGCAAAA CTAATCGAAG AATCGTTGAA ATTGTCGGCG CTGGTATACG ACAACAGCTC AGAAGCCATG AGTGTACTCG ATGAAAAGGG CGTGATCATT ACCGTCAACG CCGCCTTTAG CGTGATGACC GGCTATCGTG AATTTGAAGT GCGGGATCAA CATATTCGGT TGCTTTATTG TGACCTCAAT GGTCGCGATT TTTACACTCA AATGAACAAT GAGATCCGTG AAAAGGGCCA ATGGCAAGGG GAAATGTGGC AGCGGCGCAA GAACGGCGAG GAATATGTCA TCTGGTTAAC CATCAATACC ATCAATGACA AAGAAGGCCA TCCCTATCGG CGGGTGGCGC TGTTTTCTGA CATTACCGAC AAGAAGCAAA ATGAGCATCT GATCTGGAAG CAAGCCAACT ACGATACGCT GACAGGCTTG CCCAATCGGC GCATGTTATT GGAGTATTTA AGCAGCGAAG TGAAAAACGC TGATCGCAAT CGCAATCACT TTGCCTTATT GTTCTTGGAC TTAGATTTCT TTAAAGAAGT GAATGACACA TTAGGCCATG CCATGGGCGA TTTACTGCTG ATAGAAACTG CGAGTCGCTT AAAATCCTGC GTGCGTGATG CCGACGTCGT GGCCCGTCTT GGCGGCGATG AATTTACTGT GGTGTTAAGT TCGATGGACG ATCATAAGGG CATTGAGCGC GTTGCCGAGA ATATTCTGCG GCGAATTGCC GAGCCCTATG TGCTGGGTGA AGAAACGGCT TACATCAGCG CCAGTATAGG GATCACTTTG TATCCCGATG ATTCGACTAG TATTGAAGGC TTACTTAAGC ATGCAGATCA GGCTATGTAT GCGGCGAAAG ATCAAGGCCG TAATCGTTTC AACTATTTCA CCCCGTCGAT GCAGGAATAC GCCAAATACC GCATGCGCTT GATCCAAGAT TTGCGTCAAG CGGTCGCCAA TAAAGAATTT GAACTGCATT ATCAGCCAAT TGTTGCCTTA GCGACGGGGG AAGTGACTAA GGCCGAGGCC TTGATCCGCT GGCACCATGC CGAGCGTGGC GCAGTGTCAC CCGCCGAGTT TATTCCGGTG GCGGAAGACA CTGGACTGAT TGTTGAAATT GGTAATTGGG TGTTTGAGCA AGCCGCGCGT CAAAGTGCGG CGTGGCGCCA CGAGTTAGGG GTTGAAATCC AAATCAGCGT TAACAAATCC CCAATCCAAT TTCGCGATGA AGGCACACTG CTCAATGATT GGCTGAAGTT ATTGCAAGAT CTCAATATCA CAGGCGCGGG CGTGTGTGTT GAAATAACTG AGGGCTTGTT ATTGGACGCC AGTATGGGCG TGACCGAAAA ACTACTGGCC TACCGCGATG CGGGCGTGCA AGTGTCGCTG GACGATTTTG GTACTGGCTA CTCGTCACTC GCCTATCTGA AAAAGTTTGA TATCGACTAT CTTAAAATTG ATCAATCTTT TACCCGCCAT ATTGATACCG ATTCAAACGA TCAAATTCTC TGTGAGGCGA TAATAGTAAT GGCCCACAAA TTGGGAATGA AGGTGATTGC CGAAGGTGTC GAAACCGAGG CGCAGCGCCA AGTGTTGTTG GCAGCAGGAT GTGACTACGG CCAAGGTTAC TTGTTCTCAA GACCTGTGCC TGCCGCTGAA TTTACCCAAA AATACCTGCA GGATCCGCCG TTAGTCTCCC GTGTCTGA
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Protein sequence | MDKGILFPLV QNAALLLALV FLYDVIPKKH QRQYFLLWRI IIGMLIGGIG ITIMSTPWIY QPGVFFDTRS VILCISGLFF GGLPTFIAVV MTALYRISIG GAGMWIGVGV IVSSGLIGVI WRQYRKSYLA NISGREIFLF AYAVHIIMLL WFVFLPNGIG MPLLEQVTLP VLTIFPIATW LLSRLLSRRF ELECDEQIRL QDDFLFRSQF NVGNIGIAIT GIDQKWIKVN PRLCQMLKYS EAELLRMTWA QITHPDDLES DTLQFELMLR GEIDNYEMDK RFIVKDGSVV YTHMTVACKR GGSNTALLVI AGYLDITSQA LADQEVLASR EQLELVLSSS DLGVWDWDIR HDRIERNARS ADILGCDVDM LNANSRQWMD AIVAEDRPKV LHSIEAHIRG ETAQHKMEYR LNTLNRKVRW ILDTGKVVSR DANDNALRMC GTYTDITDAK LIEESLKLSA LVYDNSSEAM SVLDEKGVII TVNAAFSVMT GYREFEVRDQ HIRLLYCDLN GRDFYTQMNN EIREKGQWQG EMWQRRKNGE EYVIWLTINT INDKEGHPYR RVALFSDITD KKQNEHLIWK QANYDTLTGL PNRRMLLEYL SSEVKNADRN RNHFALLFLD LDFFKEVNDT LGHAMGDLLL IETASRLKSC VRDADVVARL GGDEFTVVLS SMDDHKGIER VAENILRRIA EPYVLGEETA YISASIGITL YPDDSTSIEG LLKHADQAMY AAKDQGRNRF NYFTPSMQEY AKYRMRLIQD LRQAVANKEF ELHYQPIVAL ATGEVTKAEA LIRWHHAERG AVSPAEFIPV AEDTGLIVEI GNWVFEQAAR QSAAWRHELG VEIQISVNKS PIQFRDEGTL LNDWLKLLQD LNITGAGVCV EITEGLLLDA SMGVTEKLLA YRDAGVQVSL DDFGTGYSSL AYLKKFDIDY LKIDQSFTRH IDTDSNDQIL CEAIIVMAHK LGMKVIAEGV ETEAQRQVLL AAGCDYGQGY LFSRPVPAAE FTQKYLQDPP LVSRV
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