| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1326 |
|---|
| Symbol | |
|---|
| ID | 5369767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1587593 |
|---|
| End bp | 1590640 |
|---|
| Gene Length | 3048 bp |
|---|
| Protein Length | 1015 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640829525 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_001365539 |
|---|
| Protein GI | 152999858 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAG GTATTCTCTT TCCGTTAGTG CAAAATGCGG CTTTGCTGCT GGCGTTGGTA
TTTTTGTACG ACGTGATCCC TAAAAAGCAT CAGCGGCAGT ATTTCTTGCT GTGGCGTATC
ATTATTGGAA TGCTCATCGG TGGTATTGGT ATCACCATCA TGAGCACGCC TTGGATATAT
CAACCGGGCG TTTTTTTCGA TACTCGCTCG GTTATCCTCT GTATTTCAGG CCTCTTTTTT
GGTGGTTTGC CGACCTTTAT TGCTGTAGTG ATGACGGCGC TATATCGTAT CAGTATTGGT
GGCGCTGGGA TGTGGATTGG CGTCGGCGTG ATAGTGTCAT CCGGGTTAAT TGGGGTGATC
TGGCGTCAAT ATCGTAAATC CTATTTAGCG AACATTTCAG GTAGAGAAAT CTTTCTCTTC
GCCTATGCAG TGCATATCAT AATGCTGCTG TGGTTTGTAT TTTTACCCAA TGGCATAGGA
ATGCCCTTGC TTGAACAAGT CACCCTACCT GTGCTCACCA TTTTCCCCAT TGCGACTTGG
CTATTAAGCC GCTTGTTATC GCGACGTTTT GAATTAGAGT GTGATGAACA AATTCGTCTG
CAGGATGATT TCCTATTTCG TAGCCAATTT AACGTCGGCA ACATTGGTAT TGCGATAACG
GGGATTGACC AAAAGTGGAT AAAGGTGAAT CCACGTTTAT GCCAAATGCT CAAATATTCA
GAGGCTGAAT TGCTGCGGAT GACGTGGGCG CAAATTACCC ATCCCGATGA TTTAGAAAGC
GATACGCTGC AATTTGAGCT CATGCTGCGC GGAGAAATCG ATAATTACGA GATGGATAAA
CGTTTTATCG TGAAAGACGG CAGTGTGGTT TATACCCATA TGACAGTGGC CTGCAAGCGC
GGTGGCAGTA ATACTGCGTT GCTCGTCATT GCAGGATATC TGGATATCAC CTCACAGGCC
TTAGCCGACC AAGAGGTGCT TGCTAGTCGT GAACAACTCG AACTGGTGTT GAGCAGTAGC
GATCTTGGAG TATGGGATTG GGATATTCGT CATGATCGTA TCGAACGTAA TGCTCGCAGC
GCCGATATTC TCGGCTGCGA TGTGGATATG CTCAACGCTA ACAGTCGCCA ATGGATGGAC
GCGATTGTCG CCGAAGACAG ACCTAAAGTG CTGCATTCGA TTGAGGCCCA TATTCGCGGC
GAAACGGCGC AGCATAAGAT GGAATATCGT CTAAATACAC TCAATCGCAA AGTACGCTGG
ATTTTAGACA CGGGCAAAGT GGTGAGCCGT GACGCCAATG ATAATGCTCT GCGGATGTGC
GGAACCTATA CCGATATTAC CGACGCAAAA CTAATCGAAG AATCGTTGAA ATTGTCGGCG
CTGGTATACG ACAACAGCTC AGAAGCCATG AGTGTACTCG ATGAAAAGGG CGTGATCATT
ACCGTCAACG CCGCCTTTAG CGTGATGACC GGCTATCGTG AATTTGAAGT GCGGGATCAA
CATATTCGGT TGCTTTATTG TGACCTCAAT GGTCGCGATT TTTACACTCA AATGAACAAT
GAGATCCGTG AAAAGGGCCA ATGGCAAGGG GAAATGTGGC AGCGGCGCAA GAACGGCGAG
GAATATGTCA TCTGGTTAAC CATCAATACC ATCAATGACA AAGAAGGCCA TCCCTATCGG
CGGGTGGCGC TGTTTTCTGA CATTACCGAC AAGAAGCAAA ATGAGCATCT GATCTGGAAG
CAAGCCAACT ACGATACGCT GACAGGCTTG CCCAATCGGC GCATGTTATT GGAGTATTTA
AGCAGCGAAG TGAAAAACGC TGATCGCAAT CGCAATCACT TTGCCTTATT GTTCTTGGAC
TTAGATTTCT TTAAAGAAGT GAATGACACA TTAGGCCATG CCATGGGCGA TTTACTGCTG
ATAGAAACTG CGAGTCGCTT AAAATCCTGC GTGCGTGATG CCGACGTCGT GGCCCGTCTT
GGCGGCGATG AATTTACTGT GGTGTTAAGT TCGATGGACG ATCATAAGGG CATTGAGCGC
GTTGCCGAGA ATATTCTGCG GCGAATTGCC GAGCCCTATG TGCTGGGTGA AGAAACGGCT
TACATCAGCG CCAGTATAGG GATCACTTTG TATCCCGATG ATTCGACTAG TATTGAAGGC
TTACTTAAGC ATGCAGATCA GGCTATGTAT GCGGCGAAAG ATCAAGGCCG TAATCGTTTC
AACTATTTCA CCCCGTCGAT GCAGGAATAC GCCAAATACC GCATGCGCTT GATCCAAGAT
TTGCGTCAAG CGGTCGCCAA TAAAGAATTT GAACTGCATT ATCAGCCAAT TGTTGCCTTA
GCGACGGGGG AAGTGACTAA GGCCGAGGCC TTGATCCGCT GGCACCATGC CGAGCGTGGC
GCAGTGTCAC CCGCCGAGTT TATTCCGGTG GCGGAAGACA CTGGACTGAT TGTTGAAATT
GGTAATTGGG TGTTTGAGCA AGCCGCGCGT CAAAGTGCGG CGTGGCGCCA CGAGTTAGGG
GTTGAAATCC AAATCAGCGT TAACAAATCC CCAATCCAAT TTCGCGATGA AGGCACACTG
CTCAATGATT GGCTGAAGTT ATTGCAAGAT CTCAATATCA CAGGCGCGGG CGTGTGTGTT
GAAATAACTG AGGGCTTGTT ATTGGACGCC AGTATGGGCG TGACCGAAAA ACTACTGGCC
TACCGCGATG CGGGCGTGCA AGTGTCGCTG GACGATTTTG GTACTGGCTA CTCGTCACTC
GCCTATCTGA AAAAGTTTGA TATCGACTAT CTTAAAATTG ATCAATCTTT TACCCGCCAT
ATTGATACCG ATTCAAACGA TCAAATTCTC TGTGAGGCGA TAATAGTAAT GGCCCACAAA
TTGGGAATGA AGGTGATTGC CGAAGGTGTC GAAACCGAGG CGCAGCGCCA AGTGTTGTTG
GCAGCAGGAT GTGACTACGG CCAAGGTTAC TTGTTCTCAA GACCTGTGCC TGCCGCTGAA
TTTACCCAAA AATACCTGCA GGATCCGCCG TTAGTCTCCC GTGTCTGA
|
|---|
| Protein sequence | MDKGILFPLV QNAALLLALV FLYDVIPKKH QRQYFLLWRI IIGMLIGGIG ITIMSTPWIY
QPGVFFDTRS VILCISGLFF GGLPTFIAVV MTALYRISIG GAGMWIGVGV IVSSGLIGVI
WRQYRKSYLA NISGREIFLF AYAVHIIMLL WFVFLPNGIG MPLLEQVTLP VLTIFPIATW
LLSRLLSRRF ELECDEQIRL QDDFLFRSQF NVGNIGIAIT GIDQKWIKVN PRLCQMLKYS
EAELLRMTWA QITHPDDLES DTLQFELMLR GEIDNYEMDK RFIVKDGSVV YTHMTVACKR
GGSNTALLVI AGYLDITSQA LADQEVLASR EQLELVLSSS DLGVWDWDIR HDRIERNARS
ADILGCDVDM LNANSRQWMD AIVAEDRPKV LHSIEAHIRG ETAQHKMEYR LNTLNRKVRW
ILDTGKVVSR DANDNALRMC GTYTDITDAK LIEESLKLSA LVYDNSSEAM SVLDEKGVII
TVNAAFSVMT GYREFEVRDQ HIRLLYCDLN GRDFYTQMNN EIREKGQWQG EMWQRRKNGE
EYVIWLTINT INDKEGHPYR RVALFSDITD KKQNEHLIWK QANYDTLTGL PNRRMLLEYL
SSEVKNADRN RNHFALLFLD LDFFKEVNDT LGHAMGDLLL IETASRLKSC VRDADVVARL
GGDEFTVVLS SMDDHKGIER VAENILRRIA EPYVLGEETA YISASIGITL YPDDSTSIEG
LLKHADQAMY AAKDQGRNRF NYFTPSMQEY AKYRMRLIQD LRQAVANKEF ELHYQPIVAL
ATGEVTKAEA LIRWHHAERG AVSPAEFIPV AEDTGLIVEI GNWVFEQAAR QSAAWRHELG
VEIQISVNKS PIQFRDEGTL LNDWLKLLQD LNITGAGVCV EITEGLLLDA SMGVTEKLLA
YRDAGVQVSL DDFGTGYSSL AYLKKFDIDY LKIDQSFTRH IDTDSNDQIL CEAIIVMAHK
LGMKVIAEGV ETEAQRQVLL AAGCDYGQGY LFSRPVPAAE FTQKYLQDPP LVSRV
|
|---|
| |