| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1315 |
|---|
| Symbol | |
|---|
| ID | 5370380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1568779 |
|---|
| End bp | 1570464 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640829514 |
|---|
| Product | choline dehydrogenase |
|---|
| Protein accession | YP_001365528 |
|---|
| Protein GI | 152999847 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCCCATT CACTCCAGCA AAAATATTAT AACTACATCA TAGTCGGCGC CGGTTCTGCA
GGGTGTGTGC TCGCTAATCG TCTGTCAAAG GATCCTAAAA ACGAAGTACT GTTATTAGAA
ACTGGTGGCA GCGATAAGAG CATCTTTATT CAAATGCCGA CGGCGTTATC GATTCCGATG
AACAGCCCTA AATATGCTTG GCAGTTTGAG ACGCAGCCTG AGCCGCATTT AGATAATCGC
AAGATGCATT GTCCTCGGGG TAAAGTGCTT GGCGGTTCAT CGTCGATCAA TGGCATGGTG
TATGTCCGTG GTCATGCCAG AGACTTTGAT GAGTGGCAGG CGCAAGGGGC GACCAACTGG
GATTACAGCC ATTGCTTACC GTATTTTAAA AAGGCAGAAA CCTGGGCCTT TGGTGGTGAT
GAGTATCGCG GCGAGTCTGG GCCGTTAGGC GTGAATAACG GCAACCAGAT GCAAAATCCC
TTATACCAAG CCTTTGTGGA TGCGGGCATA GCGGCGGGGT ATTTATCGAC CGCCGATTAT
AATGCGGCGC AGCAAGAAGG CTTTGGCCCT ATGCACATGA CGGTCAAAAA AGGCGTGCGT
TGGTCTACCG CTAATGCCTA TTTACGCCCG GCGATGGCCA GACGTAACCT CACTGTGTTG
ACCCACACTT TAGTGCATAA AGTGTTATTG GAAGGGCAAG CGGCCGTTGG CGTTCGCATT
GAGCACAAAG GCAAAGTTGA AGATATTCGT TGTAATAAAG AAGTGATTTT AGCTGCTGGC
TCAATAGGTT CGCCACATTT GCTGCAATTA TCAGGCATTG GCGATCCCCA AGTATTGGCC
GATGCTGGGG TCGAGTTACA ACATGAGTTG CCCGGTGTCG GTCAGAATTT ACAGGATCAT
TTAGAGTTTT ATTTCCAATT CAAATGCCTT AAACCGATTT CACTCAATGG CAAGTTAGAT
CCTTTCAGCA AGTTCTTAAT CGGTGCACGG TGGATCTTAG ATAAATCTGG CCTAGGGGCC
ACGAATCACT TTGAATCCTG TGGTTTTATT CGCTCAAAAG CCGGCCTCGA GTGGCCAGAT
TTACAGTACC ACTTTTTACC TGCGGCTATG CGTTACGATG GTAAAGAAGC CTTTGCGGGG
CATGGTTTTC AGGTACATGT GGGCCATAAC AAGCCTAAAA GCCGTGGTGC CGTGACCTTA
GTGTCGGCAG ATCCTAAAGC GCCACCTAAG ATCCAGTTCA ATTATTTACA GCATCCTGAT
GATATTGAAG GCTTTAGAGC CTGCGTGCGT TTAACCCGTG AGATCATCAA TCAAGCGCCA
TTCGATGAGT ATCGCGGTGA GGAAATTCAA CCCGGCACAC AAGTGCAAAC CGATGAGCAA
ATCGATGCCT TTGTGCGTCA ATCGGTTGAG AGTGCTTATC ATCCTTCTTG TTCATGCAAG
ATGGGCACAG ATGCGATGGC GGTGGTGGAT CCTGAAACCC GCGTGCACGG ATTGCAGAAT
TTACGGGTAG TGGATTCTTC TATTTTCCCG ACTATCCCGA ACGGTAATTT GAATGCGCCG
ACCATCATGT TGGCTGAGCG CGCCGCGGAT ATGATTTTAG AGGCTGAGAT GTTAGCGCCG
GCGGATTCCG CCGTTGTGGT TGCCGACGCT TGGCAAACCA CACAAAGAAG TACTGCGACA
AGTTAA
|
|---|
| Protein sequence | MAHSLQQKYY NYIIVGAGSA GCVLANRLSK DPKNEVLLLE TGGSDKSIFI QMPTALSIPM
NSPKYAWQFE TQPEPHLDNR KMHCPRGKVL GGSSSINGMV YVRGHARDFD EWQAQGATNW
DYSHCLPYFK KAETWAFGGD EYRGESGPLG VNNGNQMQNP LYQAFVDAGI AAGYLSTADY
NAAQQEGFGP MHMTVKKGVR WSTANAYLRP AMARRNLTVL THTLVHKVLL EGQAAVGVRI
EHKGKVEDIR CNKEVILAAG SIGSPHLLQL SGIGDPQVLA DAGVELQHEL PGVGQNLQDH
LEFYFQFKCL KPISLNGKLD PFSKFLIGAR WILDKSGLGA TNHFESCGFI RSKAGLEWPD
LQYHFLPAAM RYDGKEAFAG HGFQVHVGHN KPKSRGAVTL VSADPKAPPK IQFNYLQHPD
DIEGFRACVR LTREIINQAP FDEYRGEEIQ PGTQVQTDEQ IDAFVRQSVE SAYHPSCSCK
MGTDAMAVVD PETRVHGLQN LRVVDSSIFP TIPNGNLNAP TIMLAERAAD MILEAEMLAP
ADSAVVVADA WQTTQRSTAT S
|
|---|
| |