Gene Shew185_1295 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1295 
Symbol 
ID5370746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1542345 
End bp1545110 
Gene Length2766 bp 
Protein Length921 aa 
Translation table11 
GC content46% 
IMG OID640829493 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001365508 
Protein GI152999827 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGATAG ATGTACCTAT TTCGCAGCAA GAGCTGGATA ACTGGTTGAG GGACGTAAAC 
TTAGTCGCCG AGATATCAAA CAGTAAAGCA ATATTAATAG CATGGAATGC TGCGGGTGAA
CTTAGCAGCA TGTTAAGTTC AGATTCTGCG GCTGAAAGCG AAATACAGGC AATACTCTGT
CAGTTAAGTG GCAATCATTC GGCGAAAACC CTGCCTATCG CAACATTATC AGCTAATACG
TCATCAACCG CCACACAGTC CAAAGCCACT CCATCAACAG CCACGCCATC AAAAGCGACG
ACATCAGAAC TAACTTCCAA TCCGTCCGAT ACGTTTGAAA CTTCCGTTGA TGCCCAATTA
GCCCAAGAAC AGTTGGTCAG CTCAACCGAG CCGATTTCGG TATTGCCGCG ATTAGGTCAC
CATCAAATCA CCTCGTTATT ATTTGTGTCA GAGTTAACTG AGCTAGTCAG TCAGTCCCAA
TTGATCATAG ATACTCGGCA GCACTCAGAT TGGCGCACTT GTAGCGCAAT CGGCAGCGTG
ATTTGTTTAT CCCTCGCTTG GCCATCTGGG GCAAATTTTG GCTTTTTATG TTTCTATCAT
AACGAGGCGC ACGGCGTGGA TTCGAAAACG CTGCAGCTTG CAAAGCTTAT CAGCGATAGC
ATTCAACGCC AGTTAGGCGA GATATTGAGC CAGCACAGTG CGGCCGAAGC ATTAAGCCGA
GGTGCGCCAA CGTGTGTCGA TACGGTCGAT TTACAAACCT TTATCGATAG TTTTGAAGAA
CATATTTGGA TGAAAAATGT TGCTGGCATT TACACACTCT GTAATCGCAG CGTCGAGAAA
GCATGGGAAA TGCCGCGCAG CGAGATTGTC GGTAAATCCG ATGTCGAACT CTTTGGTGCT
GAAATTGCAA ATATTTTTCT AGAGGGTGAT AGGCTCGCTA TCGAGTCTGG CATGCCTATT
ATTGTCGCTG AGTGTTTAGA CGGCAATGAA GCTAAAAATC ATCTTTGGTT AGAAACGCTC
AAACTCCCAA CCTTAAATCC CCAAGGTGAG TTTGTGGGCG TTATCGGTAT GACTCGCAAT
ATTTCTAAGC ATAAAGAGGT TGAAGAACAA CTGACACTGG CGACTAATGT ATTTAAAAAC
TCGGTCGAAG GCGTGGTTGT GACCGACAGA CACGGCAATA TCACCGACGT AAATGGCGCA
TTTTTTGAGA TCACAGGTTA TGTGAGGGAA GAGCTGCTCG GTCAGAATCC ACGGATTTTT
AGCTCGGGTC GCCATGATAA AGCATTCTTC GACAAACTGT GGAATGCCCT GTTGGCTAAC
GGTAAGTGGA ACGGTGAAAT TTGGAATCGG CGTAAAAACG GCACTATTTT CCCGCAAAAT
ATCACCATAA GTACGATTTA TGATGAAGTC GGTGATGTGC GTTATTTTGT CGCTGTGTTT
GCCGATATTT CTGCCCAAAA AGAGAATGAA GCGCAACTCA CGCACTTAGC GTATTTCGAC
CCGCTAACGC ATTTGCCTAA TCGCATGAAG TTTATGATGC AGCTCAAACA AGAAGTACGG
CAAGCTAAGC GGCTGAATTT GCAGTTAGCG ACTGTGATGA TAGATGTCGA TTTGTTTAAG
CATATCAACG ACAGTTTTGG CCATAGCATA GGTGATGAAA TGCTGGTCGA GCTTGCCAAG
CGTTTACGCA GCCAAGTAGG CGATCAGGAT GTGTTGTCAC GGATTGGTGG CGATGAGTTT
GTGGCGTTAA TTTCGGGGAT CGATAATAAC GAAGATGCCA CGGTTGCCAT TAATCAATTA
CGCCAAGTAT TTGAACAACC CTTTATTGTG AGCACAGGCG ACCACTTGCG TTTGACCGCG
AGCATGGGCG TGTCTTTGTA TCCAAATGAT GGAACCGATG CGGACACTCT ACTGCGTAAC
GCCGATGCGG CCATGTATCG TGCAAAAAAT GATGGCCGCA ATAATTATGC TTTTTATACT
GAGTCCTTAA CGCAGCAATC TTTTGAACAT CTTAAGCTGC AAAGTGCCCT CTATGGTGCG
ATTGAGCAAA ATGCCTTGTA CTTGATGTAC CAGCCAAAAC TCGACTTAGT GTCTCGAAAA
ACCGTGGGGT TTGAAGCGCT GCTGCGTTGG CACGATCCTC AACTGGGTTT AATTTCACCC
GCGGTATTTA TACCCGTGGC TGAAAAAATT GGTCTTATCC ATGAGATAGG TTTATGGGTG
CTAGAAACCG CCTGTCGTCA GGGTATGCGT TGGCTTAGGG AAGGTAAACA CTTTGGCCGC
ATTGCGGTGA ACGTGGCTGG ACAGCAGTTA CAGCGCAGCT CCTTTGTGGA TGATGTAAAA
CGTGTCTTAG CTGAAACAGG CTTGCCCGCC AAACACTTAG AGCTTGAAGT GACCGAAAGT
GTGATGATGC AAAATCCCGA TCTTGCAATC CGTGACTTAA AGCGACTTGG CGATCTGGGC
ATCGAATTAT CGGTCGATGA CTTTGGAACC GGTTATTCAT CGCTGAATTA TTTGAAAAAG
CTACCCATCC ATAAGCTGAA GATTGACCAA TCCTTCGTGC GGGATATTCC CTTCGACACT
AACAATACCG CGATTGCTAA AGCTGTGATT GCGCTTGGAC ATGCGTTGAA GCTCGACATT
ATCGCCGAAG GAGTGGAAAC CAAAGAACAA GCCGATTTTC TGCAACAAAA TCAGTGTGAT
CAAGCCCAAG GTTATCTCTT TAGTCGTCCG CAACTACCAG AAGATCTCGA CGCATTTCTA
TCGTGA
 
Protein sequence
MMIDVPISQQ ELDNWLRDVN LVAEISNSKA ILIAWNAAGE LSSMLSSDSA AESEIQAILC 
QLSGNHSAKT LPIATLSANT SSTATQSKAT PSTATPSKAT TSELTSNPSD TFETSVDAQL
AQEQLVSSTE PISVLPRLGH HQITSLLFVS ELTELVSQSQ LIIDTRQHSD WRTCSAIGSV
ICLSLAWPSG ANFGFLCFYH NEAHGVDSKT LQLAKLISDS IQRQLGEILS QHSAAEALSR
GAPTCVDTVD LQTFIDSFEE HIWMKNVAGI YTLCNRSVEK AWEMPRSEIV GKSDVELFGA
EIANIFLEGD RLAIESGMPI IVAECLDGNE AKNHLWLETL KLPTLNPQGE FVGVIGMTRN
ISKHKEVEEQ LTLATNVFKN SVEGVVVTDR HGNITDVNGA FFEITGYVRE ELLGQNPRIF
SSGRHDKAFF DKLWNALLAN GKWNGEIWNR RKNGTIFPQN ITISTIYDEV GDVRYFVAVF
ADISAQKENE AQLTHLAYFD PLTHLPNRMK FMMQLKQEVR QAKRLNLQLA TVMIDVDLFK
HINDSFGHSI GDEMLVELAK RLRSQVGDQD VLSRIGGDEF VALISGIDNN EDATVAINQL
RQVFEQPFIV STGDHLRLTA SMGVSLYPND GTDADTLLRN ADAAMYRAKN DGRNNYAFYT
ESLTQQSFEH LKLQSALYGA IEQNALYLMY QPKLDLVSRK TVGFEALLRW HDPQLGLISP
AVFIPVAEKI GLIHEIGLWV LETACRQGMR WLREGKHFGR IAVNVAGQQL QRSSFVDDVK
RVLAETGLPA KHLELEVTES VMMQNPDLAI RDLKRLGDLG IELSVDDFGT GYSSLNYLKK
LPIHKLKIDQ SFVRDIPFDT NNTAIAKAVI ALGHALKLDI IAEGVETKEQ ADFLQQNQCD
QAQGYLFSRP QLPEDLDAFL S