Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1295 |
Symbol | |
ID | 5370746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 1542345 |
End bp | 1545110 |
Gene Length | 2766 bp |
Protein Length | 921 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640829493 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001365508 |
Protein GI | 152999827 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGATAG ATGTACCTAT TTCGCAGCAA GAGCTGGATA ACTGGTTGAG GGACGTAAAC TTAGTCGCCG AGATATCAAA CAGTAAAGCA ATATTAATAG CATGGAATGC TGCGGGTGAA CTTAGCAGCA TGTTAAGTTC AGATTCTGCG GCTGAAAGCG AAATACAGGC AATACTCTGT CAGTTAAGTG GCAATCATTC GGCGAAAACC CTGCCTATCG CAACATTATC AGCTAATACG TCATCAACCG CCACACAGTC CAAAGCCACT CCATCAACAG CCACGCCATC AAAAGCGACG ACATCAGAAC TAACTTCCAA TCCGTCCGAT ACGTTTGAAA CTTCCGTTGA TGCCCAATTA GCCCAAGAAC AGTTGGTCAG CTCAACCGAG CCGATTTCGG TATTGCCGCG ATTAGGTCAC CATCAAATCA CCTCGTTATT ATTTGTGTCA GAGTTAACTG AGCTAGTCAG TCAGTCCCAA TTGATCATAG ATACTCGGCA GCACTCAGAT TGGCGCACTT GTAGCGCAAT CGGCAGCGTG ATTTGTTTAT CCCTCGCTTG GCCATCTGGG GCAAATTTTG GCTTTTTATG TTTCTATCAT AACGAGGCGC ACGGCGTGGA TTCGAAAACG CTGCAGCTTG CAAAGCTTAT CAGCGATAGC ATTCAACGCC AGTTAGGCGA GATATTGAGC CAGCACAGTG CGGCCGAAGC ATTAAGCCGA GGTGCGCCAA CGTGTGTCGA TACGGTCGAT TTACAAACCT TTATCGATAG TTTTGAAGAA CATATTTGGA TGAAAAATGT TGCTGGCATT TACACACTCT GTAATCGCAG CGTCGAGAAA GCATGGGAAA TGCCGCGCAG CGAGATTGTC GGTAAATCCG ATGTCGAACT CTTTGGTGCT GAAATTGCAA ATATTTTTCT AGAGGGTGAT AGGCTCGCTA TCGAGTCTGG CATGCCTATT ATTGTCGCTG AGTGTTTAGA CGGCAATGAA GCTAAAAATC ATCTTTGGTT AGAAACGCTC AAACTCCCAA CCTTAAATCC CCAAGGTGAG TTTGTGGGCG TTATCGGTAT GACTCGCAAT ATTTCTAAGC ATAAAGAGGT TGAAGAACAA CTGACACTGG CGACTAATGT ATTTAAAAAC TCGGTCGAAG GCGTGGTTGT GACCGACAGA CACGGCAATA TCACCGACGT AAATGGCGCA TTTTTTGAGA TCACAGGTTA TGTGAGGGAA GAGCTGCTCG GTCAGAATCC ACGGATTTTT AGCTCGGGTC GCCATGATAA AGCATTCTTC GACAAACTGT GGAATGCCCT GTTGGCTAAC GGTAAGTGGA ACGGTGAAAT TTGGAATCGG CGTAAAAACG GCACTATTTT CCCGCAAAAT ATCACCATAA GTACGATTTA TGATGAAGTC GGTGATGTGC GTTATTTTGT CGCTGTGTTT GCCGATATTT CTGCCCAAAA AGAGAATGAA GCGCAACTCA CGCACTTAGC GTATTTCGAC CCGCTAACGC ATTTGCCTAA TCGCATGAAG TTTATGATGC AGCTCAAACA AGAAGTACGG CAAGCTAAGC GGCTGAATTT GCAGTTAGCG ACTGTGATGA TAGATGTCGA TTTGTTTAAG CATATCAACG ACAGTTTTGG CCATAGCATA GGTGATGAAA TGCTGGTCGA GCTTGCCAAG CGTTTACGCA GCCAAGTAGG CGATCAGGAT GTGTTGTCAC GGATTGGTGG CGATGAGTTT GTGGCGTTAA TTTCGGGGAT CGATAATAAC GAAGATGCCA CGGTTGCCAT TAATCAATTA CGCCAAGTAT TTGAACAACC CTTTATTGTG AGCACAGGCG ACCACTTGCG TTTGACCGCG AGCATGGGCG TGTCTTTGTA TCCAAATGAT GGAACCGATG CGGACACTCT ACTGCGTAAC GCCGATGCGG CCATGTATCG TGCAAAAAAT GATGGCCGCA ATAATTATGC TTTTTATACT GAGTCCTTAA CGCAGCAATC TTTTGAACAT CTTAAGCTGC AAAGTGCCCT CTATGGTGCG ATTGAGCAAA ATGCCTTGTA CTTGATGTAC CAGCCAAAAC TCGACTTAGT GTCTCGAAAA ACCGTGGGGT TTGAAGCGCT GCTGCGTTGG CACGATCCTC AACTGGGTTT AATTTCACCC GCGGTATTTA TACCCGTGGC TGAAAAAATT GGTCTTATCC ATGAGATAGG TTTATGGGTG CTAGAAACCG CCTGTCGTCA GGGTATGCGT TGGCTTAGGG AAGGTAAACA CTTTGGCCGC ATTGCGGTGA ACGTGGCTGG ACAGCAGTTA CAGCGCAGCT CCTTTGTGGA TGATGTAAAA CGTGTCTTAG CTGAAACAGG CTTGCCCGCC AAACACTTAG AGCTTGAAGT GACCGAAAGT GTGATGATGC AAAATCCCGA TCTTGCAATC CGTGACTTAA AGCGACTTGG CGATCTGGGC ATCGAATTAT CGGTCGATGA CTTTGGAACC GGTTATTCAT CGCTGAATTA TTTGAAAAAG CTACCCATCC ATAAGCTGAA GATTGACCAA TCCTTCGTGC GGGATATTCC CTTCGACACT AACAATACCG CGATTGCTAA AGCTGTGATT GCGCTTGGAC ATGCGTTGAA GCTCGACATT ATCGCCGAAG GAGTGGAAAC CAAAGAACAA GCCGATTTTC TGCAACAAAA TCAGTGTGAT CAAGCCCAAG GTTATCTCTT TAGTCGTCCG CAACTACCAG AAGATCTCGA CGCATTTCTA TCGTGA
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Protein sequence | MMIDVPISQQ ELDNWLRDVN LVAEISNSKA ILIAWNAAGE LSSMLSSDSA AESEIQAILC QLSGNHSAKT LPIATLSANT SSTATQSKAT PSTATPSKAT TSELTSNPSD TFETSVDAQL AQEQLVSSTE PISVLPRLGH HQITSLLFVS ELTELVSQSQ LIIDTRQHSD WRTCSAIGSV ICLSLAWPSG ANFGFLCFYH NEAHGVDSKT LQLAKLISDS IQRQLGEILS QHSAAEALSR GAPTCVDTVD LQTFIDSFEE HIWMKNVAGI YTLCNRSVEK AWEMPRSEIV GKSDVELFGA EIANIFLEGD RLAIESGMPI IVAECLDGNE AKNHLWLETL KLPTLNPQGE FVGVIGMTRN ISKHKEVEEQ LTLATNVFKN SVEGVVVTDR HGNITDVNGA FFEITGYVRE ELLGQNPRIF SSGRHDKAFF DKLWNALLAN GKWNGEIWNR RKNGTIFPQN ITISTIYDEV GDVRYFVAVF ADISAQKENE AQLTHLAYFD PLTHLPNRMK FMMQLKQEVR QAKRLNLQLA TVMIDVDLFK HINDSFGHSI GDEMLVELAK RLRSQVGDQD VLSRIGGDEF VALISGIDNN EDATVAINQL RQVFEQPFIV STGDHLRLTA SMGVSLYPND GTDADTLLRN ADAAMYRAKN DGRNNYAFYT ESLTQQSFEH LKLQSALYGA IEQNALYLMY QPKLDLVSRK TVGFEALLRW HDPQLGLISP AVFIPVAEKI GLIHEIGLWV LETACRQGMR WLREGKHFGR IAVNVAGQQL QRSSFVDDVK RVLAETGLPA KHLELEVTES VMMQNPDLAI RDLKRLGDLG IELSVDDFGT GYSSLNYLKK LPIHKLKIDQ SFVRDIPFDT NNTAIAKAVI ALGHALKLDI IAEGVETKEQ ADFLQQNQCD QAQGYLFSRP QLPEDLDAFL S
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