Gene Shew185_1240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1240 
Symbol 
ID5372468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand+ 
Start bp1481042 
End bp1481668 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content48% 
IMG OID640829439 
Productanti sigma-E protein, RseA 
Protein accessionYP_001365454 
Protein GI152999773 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.000610666 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAAAT TAGGTCAAGA ATGGGTATCT GCCGCAGTCG ATGGAGAGAC TGATGCGCAG 
ACCATGGCAG AGTTATCTGC TGATACACAT TCACATGATA AATGGCATAA CTATCATATG 
ATAGGCGATG CCATGCGTGG CGAGTTGCCG CAGAATATTG TGTTAGATCT CTCTGCTAGC 
ATTGCCGCCG CCATTGAGCT TGAGCCAGCG ATAGTTGCGC CTAAGCATCA TGCGTCTAAG 
GTTGCTGCAC CTGTAACCCC GCAAATTGCC GCCAATGCGC AGCAAAACCG CGTCGTACCT 
TTGTTTAAGC AATTTGGCCA ATATGCCATT GCTGCGACGG TTGCTATGTT TGCGATTGTT 
GGTGTGCAGA ATTACAATCA GAGCGCCGAT GATGCCGCGT CACCATCGCC CGTATTGATT 
ACCAGACCGC TAATTGGTAG CGCATCACCT GTGAGCCTAC AAACGGGTCC AGTTCAACAG 
AATCAAGGTT ATACCAATGA TCAGGTGAAC GAGCAGCGTC GCCGAATTAA TACTTATATT 
CAAGATCATA TGTTGCAACA ACGATTGAAT ACCGGTGCGG TTGTAGAGGA CAATACCGAG 
GTCGTACCCG TTCCGGTCAA TCAATAA
 
Protein sequence
MDKLGQEWVS AAVDGETDAQ TMAELSADTH SHDKWHNYHM IGDAMRGELP QNIVLDLSAS 
IAAAIELEPA IVAPKHHASK VAAPVTPQIA ANAQQNRVVP LFKQFGQYAI AATVAMFAIV 
GVQNYNQSAD DAASPSPVLI TRPLIGSASP VSLQTGPVQQ NQGYTNDQVN EQRRRINTYI 
QDHMLQQRLN TGAVVEDNTE VVPVPVNQ